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Figure 1 | BMC Genomics

Figure 1

From: PAVE: Program for assembling and viewing ESTs

Figure 1

A schema of the PAVE assembly algorithm. The TC (transitive closure) loop is generally executed multiple times in order to merge contigs that have similar CCSs (contig consensus sequences). The user defines how many times the loop is executed, where for each loop a different set of parameters can be used. If the algorithm is being executed on a multi-processor machine, the user can request that the TC step use multiple processors.

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