The jPAVE interface. Within the contig display, the numbers in parentheses are the number of ESTs buried in the corresponding EST. From the stand-alone version of jPAVE shown here, a set of ESTs can be selected, and CAP3 or Phrap can be executed on the ESTs. Also, ESTs from multiple contigs can be selected and assembled. The 'Contig Pairs' link lists all pairs of contigs that are similar; selecting a pair shows the nucleotide and amino acid alignment.