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Table 3 Conserved genomic islands identified by CGH in O45 PEPEC strains.

From: Two distinct groups of porcine enteropathogenic Escherichia coli strains of serogroup O45 are revealed by comparative genomic hybridization and virulence gene microarray

K-loop

K-island

O-island

S-loop

Number of ORFs

Notable function of this Island or Loop (if known)

  

OI#17

S-loop #27

5

ribose transport related protein

   

S-loop #45

1

 
  

OI #32

 

1

 
  

OI #61

S-loop #104

2

fimbrial protein

  

OI #69

S-loop #89

2

 
  

OI #71

S-loop #109

1

chaperone protein

  

OI #94

 

1

 
  

OI #103

S-loop #173

2

 
  

OI #108

S-loop #56

1

chaperone protein

  

OI #110

S-loop #191

4

decarboxylase protein

   

S-loop #192

8

 
  

OI#118

 

1

 
  

OI#119

S-loop #202

5

ABC transport protein

  

OI#120

S-loop #203

1

 
  

OI#126

S-loop #211

2

sugar PTS protein

  

OI#130

S-loop #215

1

bacterioferritin protein

  

OI#145

S-loop #239

7

LPS biosynthesis protein

  

OI#169

S-loop #278

2

 

K-loop#90

KI #56

  

12

 

K-loop#108

KI #66

  

20

 

K-loop#115

KI #71

  

1

 

K-loop#119

KI #73

  

1

 

K-loop#126

KI #76

  

1

 

K-loop#134

KI #80

  

1

 

K-loop#232

KI #141

  

8

 

K-loop#271

KI#163

  

8

 
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BMC Genomics

ISSN: 1471-2164

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