Skip to main content

Advertisement

Table 5 Thirty highly abundant protein families in the radiata pine xylogenesis EST resource.

From: Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

Protein family Function annotation Pfam accession ESTs %
Cellulose_synt Cellulose synthase PF03552 108 1.81
MIP Major intrinsic protein PF00230 90 1.51
Pkinase Protein kinase domian PF00069 58 0.97
Actin Actin PF00022 50 0.84
Tubulin_C Tubulin/FtsZ family, C-terminal domain PF03953 45 0.76
Cu_bind_like Plastocyanin-like domain PF02298 41 0.69
P450 Cytochrome P450 PF00067 38 0.64
Uiquitin Ubiquitin family PF00240 38 0.64
S-AdoMet_synt_M S-adenosylmethionine synthetase, Central domain PF02772 37 0.62
RRM_1 RNA recognition motif PF00076 35 0.59
Meth_synt_2 Cobalamin-independent synthase, Catalytic domain PF01717 35 0.59
DUF1218 Unknown function protein PF06749 34 0.57
Methyltransf_3 O-methyltransferases PF01596 30 0.50
PAR1 Photoassimilate-responding protein PF06521 30 0.50
Ras Ras superfamily PF00071 28 0.47
Hin1 Harpin-induced protein 1 (Hin1) PF07320 27 0.45
Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family PF00234 26 0.44
Tubulin Tubulin/FtsZ family, GTPases domain PF00091 25 0.42
Cu-oxidase_2 Multicopper oxidase-like domains PF07731 25 0.42
Peroxidase Peroxidase PF00141 24 0.40
Efhand Signaling proteins and buffering/transport proteins PF00036 23 0.39
Mito_carr Mitochondrial carrier protein PF00153 23 0.39
UQ_con Ubiquitin-conjugating enzyme PF00179 23 0.39
Peptidase_C1 Papain family cysteine protease PF00112 21 0.35
Glyco_hydro_9 Glycosyl hydrolase family 9 PF00759 21 0.35
Arf ADP ribosylation factor (Arf) PF00025 20 0.34
Thioredoxin Thioredoxin PF00085 20 0.34
Ricin_B_lectin Ricin-type beta-trefoil lectin domain PF00652 20 0.34
Glyco_hydro_19 Chitinase class I PF00182 19 0.32
Epimerase NAD dependent epimerase/dehydratase family PF01370 19 0.32