Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

Li, Xinguo; Wu, Harry X; Dillon, Shannon K; Southerton, Simon G

doi:10.1186/1471-2164-10-41

BMC Genomics

Table 5 Thirty highly abundant protein families in the radiata pine xylogenesis EST resource.

From: Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

Protein family	Function annotation	Pfam accession	ESTs	%
Cellulose_synt	Cellulose synthase	PF03552	108	1.81
MIP	Major intrinsic protein	PF00230	90	1.51
Pkinase	Protein kinase domian	PF00069	58	0.97
Actin	Actin	PF00022	50	0.84
Tubulin_C	Tubulin/FtsZ family, C-terminal domain	PF03953	45	0.76
Cu_bind_like	Plastocyanin-like domain	PF02298	41	0.69
P450	Cytochrome P450	PF00067	38	0.64
Uiquitin	Ubiquitin family	PF00240	38	0.64
S-AdoMet_synt_M	S-adenosylmethionine synthetase, Central domain	PF02772	37	0.62
RRM_1	RNA recognition motif	PF00076	35	0.59
Meth_synt_2	Cobalamin-independent synthase, Catalytic domain	PF01717	35	0.59
DUF1218	Unknown function protein	PF06749	34	0.57
Methyltransf_3	O-methyltransferases	PF01596	30	0.50
PAR1	Photoassimilate-responding protein	PF06521	30	0.50
Ras	Ras superfamily	PF00071	28	0.47
Hin1	Harpin-induced protein 1 (Hin1)	PF07320	27	0.45
Tryp_alpha_amyl	Protease inhibitor/seed storage/LTP family	PF00234	26	0.44
Tubulin	Tubulin/FtsZ family, GTPases domain	PF00091	25	0.42
Cu-oxidase_2	Multicopper oxidase-like domains	PF07731	25	0.42
Peroxidase	Peroxidase	PF00141	24	0.40
Efhand	Signaling proteins and buffering/transport proteins	PF00036	23	0.39
Mito_carr	Mitochondrial carrier protein	PF00153	23	0.39
UQ_con	Ubiquitin-conjugating enzyme	PF00179	23	0.39
Peptidase_C1	Papain family cysteine protease	PF00112	21	0.35
Glyco_hydro_9	Glycosyl hydrolase family 9	PF00759	21	0.35
Arf	ADP ribosylation factor (Arf)	PF00025	20	0.34
Thioredoxin	Thioredoxin	PF00085	20	0.34
Ricin_B_lectin	Ricin-type beta-trefoil lectin domain	PF00652	20	0.34
Glyco_hydro_19	Chitinase class I	PF00182	19	0.32
Epimerase	NAD dependent epimerase/dehydratase family	PF01370	19	0.32

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ISSN: 1471-2164

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