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Table 6 Forty-one transcription factor families in the radiata pine xylogenesis EST resource.

From: Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

TF family Description ESTs % *
PHD Cys4--His--Cys3 zinc finger 55 15.36
C3H Zinc finger, C-x8-C-x5-C-x3-H type (and similar) 38 10.61
HB Homeobox domain 29 8.10
C2H2 Zinc finger, C2H2 type 23 6.42
NAC No apical meristem (NAM) protein 22 6.15
MYB-related N-terminal myb-domain 20 5.59
MYB Myb-like DNA-binding domain 16 4.47
AP2-EREBP AP2 domain 15 4.19
PcG Polycomb group (PcG) proteins 14 3.91
bHLH Helix-loop-helix DNA-binding domain 11 3.07
LIM LIM domain 11 3.07
EIL Ethylene insensitive1 (EIN3) 10 2.79
HMG HMG (high mobility group) box 8 2.23
C2C2-GATA GATA zinc finger 7 1.96
LUG LEUNIG gene 7 1.96
WRKY WRKY DNA-binding domain 7 1.96
bZIP Basic leucine zipper (bZIP) motif 6 1.68
GARP-G2-like GLK proteins 5 1.40
SBP SBP-domain 5 1.40
Trihelix Trihelix DNA-binding domain 5 1.40
MADS DNA-binding and dimerisation domain 4 1.12
CCAAT-Dr1 CCAAT-box-related motifs 4 1.12
ZIM Zinc-finger protein expressed in inflorescence meristem 4 1.12
Alfin Cys4 zinc finger and His/Cys3 3 0.84
AUX-IAA AUX/IAA family 3 0.84
TAZ TAZ zinc finger 3 0.84
ABI3-VP1 ABI3/VP1 proteins 2 0.56
AS2 Asymmetric leaves2 2 0.56
BES1 BRI1-EMS-Suppressor 1 2 0.56
C2C2-CO-like CCT motif 2 0.56
CAMTA Calmodulin-binding transcription activators 2 0.56
FHA Forkhead domain 2 0.56
GRF Growth-regulating factor1 2 0.56
MBF1 Multiprotein bridging factor 1 2 0.56
ARF Auxin response factor 1 0.28
ARID AT-rich interaction domain 1 0.28
CCAAT-HAP3 CCAAT-binding factor 1 0.28
HSF Heat shock factor 1 0.28
Nin-like Nodule inception protein 1 0.28
TLP Tubby family 1 0.28
ZF-HD ZF-HD class homeobox domain 1 0.28
  1. *: % is based on the 358 radiata pine ESTs with homologs in the PlantTFDB.