Skip to main content

Table 1 BDNF-correlated genes conserved between human, mouse and rat.

From: Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation

GO category

Conserved correlated genes

protein tyrosine kinase PW *

ANGPT1

BAIAP2

DUSP1

EPHA4

EPHA5

EPHA7

FGFR1

GAS6

KALRN

IRS2

NTRK2

 
 

PTPRF

FP106

          

dendrite localization*

DBN1

FREQ

GRIA3

KCND2

NTRK2

       

signal transduction*

ANGPT1

CREM

DUSP6

EPHA5

FGFR1

IGFBP5

KALRN

NR4A2

PDE4B

PRKAG2

PTPRF

TBX3

 

BAIAP2

CXCL5

EGR1

EPHA7

GAS6

IL6ST

KLF10

NTRK2

PENK

PRKCB

RGS4

ZFP106

 

COL11A1

DUSP1

EPHA4

FGF13

GRIA3

IRS2

MYH9

ODZ2

PLAUR

PRKCE

SCG2

 

hsa-miR-369-3p*

COL11A1

DBC1

DCN

DUSP1

GAS6

ITF-2

KLF10

NEUROD6

PENK

TRPC4

  

TF: CCCGCCCCCRCCCC (KROX) *

ATF3

ATP1B1

CCND2

COL11A1

DBN1

DLGAP4

EPHA7

GAS6

GRIA3

IL6ST

IRS2 KCND2

 
 

KLF10

NFIA

NPTXR

PCSK2

SNCA

THRA

      

TF: GGGGAGGG (MAZ/SP1) *

ATF3

CCND2

DBC1

DUSP6

FREQ

ITF-2

MBP

NPTXR

PCSK1

PTGS2

THRA

 
 

BAIAP2

COL4A5

DBN1

EGR1

GRIA3

KALRN

MDM2

NR4A2

PDE4B

PTPRF

TRPC4

 
 

BASP1

CREM

DLGAP4

EPHA5

HN1

KLF10

NFIA

NTRK2

PRKCB1

PURA

VCAN

 
 

CAMK2D

CXCL5

DUSP1

EPHA7

IRS2

LMO7

NPTX1

OLFM1

PRSS23

TBX3

  

NS development*

BAIAP2

EPHA4

FGF13

IRS2

MBP

NEUROD6

NR4A2

OLFM1

PTPRF

SMARCA4

TBX3

 
 

DBN1

EPHA7

FGFR1

KALRN

NEFL

NPTX1

NTRK2

PCSK2

PURA

SNCA

  

angiogenesis

ANGPT1

BAIAP2

CYR61

MYH9

SCG2

SERPINE1

TBX3

     

apoptosis/anti-apoptosis

BIRC4

KLF10

NEFL

PLAGL1

PRKCE

SCG2

SNCA

TBX3

    

cell cycle

CAMK2D

CORO1A

DUSP1

MDM2

MYH9

PPP3CA

      

synaptic transmission/plasticity

DBN1

KCND2

MBP

NPTX1

NR4A2

SNCA

      
  1. GO categories marked with a star (*) have been reported as statistically significant for this gene list by g:Profiler analysis tool. Human gene names are given representing mouse and rat orthologs whenever gene names for all three species are not the same. GO - gene ontology, PW - pathway, TF - transcription factor, NS - nervous system.