Figure 5
From: Large-scale inference of the point mutational spectrum in human segmental duplications
Overrepresentation of DNA oligomers (five-mers) at sites of SNPs and recorded DIMs. The plot compares the abundance of five-mers at substitution sites between SNPs and DIMs. Overrepresentation for a given five-mer is defined as the ratio between the number of observed five-mers with the expected number of five-mers. Five-mers are further divided into three groups; five-mers with CpG in their surroundings (e.g. CGAAT/ATTCG), those with CpG in the center (e.g. AGCGA/TCGCT) and five-mers with no CpGs.