Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa

BMC Genomics

Table 2 Summary of the synteny blocks between the B. rapa genetic map and the Arabidopsis genome sequence deduced from BAC alignment

Arabidopsis chromosome	No. of B. rapa BACs aligned	B. rapa linkage groups aligned (cM)	Total length of B. rapa linkage groups aligned	Total length of Arabidopsis genome aligned^a	Length of Arabidopsis genome covered by the alignment (% coverage)	Total length of Arabidopsis chromosome^b
1	43	A6 (32.0), A7 (49.1), A8 (27.3), A9 (12.1), A10 (8.5)	129.0 cM	21.6 Mb	13.7 Mb (45%)	30.4 Mb
2	36	A3 (12.5), A4 (30.5), A5 (35.1), A6 (2.8), A9 (7.9)	88.7 cM	17.9 Mb	10.0 Mb (51%)	19.7 Mb
3	59	A1 (24.4), A3 (5.7), A4 (25.7), A5 (38.8), A6 (8.5), A7 (9.6), A9 (10.9)	123.6 cM	33.4 Mb	16.9 Mb (72%)	23.5 Mb
4	30	A1 (50.4), A3 (36.5), A8 (37.7)	124.6 cM	24.2 Mb	10.1 Mb (54%)	18.6 Mb
5	16	A2 (32.2), A3 (2.4), A9 (1.4), A10 (33.1)	69.1 cM	14.6 Mb	9.9 Mb (37%)	27.0 Mb
Total	184		534.9 cM (48%)	111.7 Mb	60.5 Mb (51%)	119.2 Mb

^aDetails of redundantly represented regions in the B. rapa genome are in Table 5.
^b[51]

ISSN: 1471-2164