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Table 3 Summary of the synteny blocks between the B. rapa second generation reference genetic map and the Arabidopsis genome sequence

From: Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa

Synteny block B. rapa Arabidopsis Aligned Arabidopsis Corresponding genome block identified by
  Aligned position Aligned Aligned position Aligned length(Kb)   
  length (cM) length (cM) per 1 cM of B. rapa  
  Linkage group From (cM) To (cM)   Chromosome From (Mb) To (Mb)    Schranz et al. 2006[29] Parkin et al. 2005[28]
Block01a A01 2.7 52.7 50.0 4 12.3 18.6 6.2 125 U C4B
Block02   78.2 78.7 0.4 4 8.5 8.8 0.3 683 T C4B'
Block03   105.9 130.3 24.4 3 1.1 7.5 6.4 260 F C3A
Block04 A02 8.0 40.2 32.2 5 1.1 5.9 4.8 150 R C5A
Block05a A03 19.6 28.8 9.2 2 12.9 18.6 5.7 618 J C2C
Block06   42.6 45.0 2.4 5 4.2 4.5 0.3 142 R C5A
Block07   49.9 52.8 2.9 3 4.5 7.8 3.3 1,168 F C3A
Block08   57.2 60.1 2.9 3 8.1 8.9 0.8 268 F C3A
Block09a   63.9 67.2 3.2 2 1.6 2.2 0.6 183 G C2A
Block10a   82.2 118.6 36.5 4 8.7 17.8 9.1 249 T, U C4B', C4B
Block11a A04 4.0 29.7 25.7 3 19.5 23.4 3.9 152 N C3D
Block12   59.4 89.9 30.5 2 11.7 16.3 4.5 148 I, J C2B, C2C
Block13a A05 20.0 55.1 35.1 2 14.1 19.7 5.6 160 J C2C
Block14a   59.9 98.7 38.8 3 2.5 13.3 10.8 279 F C3A
Block15a A06 40.3 68.2 27.9 1 3.5 7.4 3.9 140 A, B C1A, C1B
Block16a   74.2 78.3 4.1 1 6.8 7.3 0.5 118 B C1B
Block17   106.6 115.0 8.5 3 9.8 11.1 1.4 163 L C3B
Block18   117.2 120.0 2.8 2 0.2 1.0 0.9 308 K C2A
Block19a A07 19.0 34.3 15.3 1 8.8 10.9 2.1 135 B C1B
Block20a   45.3 54.8 9.6 3 20.1 22.8 2.6 276 N C3D
Block21   59.5 93.3 33.8 1 25.5 30.0 4.5 133 E C1E
Block22 A08 0.0 4.0 4.0 1 10.8 11.1 0.3 63 B C1B
Block23a   4.9 42.6 37.7 4 9.9 18.4 8.5 225 U C4B
Block24a   45.7 69.0 23.2 1 4.4 10.6 6.1 264 A, B C1A, C1B
Block25a A09 7.7 9.1 1.4 5 15.9 19.8 3.8 2,796 S, V C5C, C5D
Block26   37.5 49.6 12.1 1 8.4 11.2 2.8 230 B C1B
Block27   57.3 68.1 10.9 3 18.7 22.8 4.2 383 N C3D
Block28   69.2 77.0 7.9 2 9.0 9.6 0.6 77 H, I C2A, C2B
Block29 A10 5.3 13.8 8.5 1 0.6 2.1 1.5 173 A C1A
Block30   38.9 72.0 33.1 5 1.6 7.2 5.6 169 R C5A
  1. aBlocks expanded compared to the previous reports [27, 28]