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Table 2 SCOTS identified Xenorhabdus koppenhoeferi genes induced upon infection of the white grub Rhizotrogus majalis.

From: Comparative in vivo gene expression of the closely related bacteria Photorhabdus temperata and Xenorhabdus koppenhoeferi upon infection of the same insect host, Rhizotrogus majalis

Class Gene --Possible function Id/Sim% Span E-value
Cell struture     
  dacC-Penicillin-binding protein 6 precursor/D-alanyl-D-alanine carboxypeptidase fraction C (Photorhabdus luminescens, plu1573) 65/78 330 9E-35
  fliM-Flagella MS-ring protein (P. luminescens, plu1941) 90/98 244 7E-32
  lpsE -Putative LPS biosynthesis protein (P. luminescens, plu4861) 84/86 132 9E-18
  ompF-Outer membrane protein (Xenorhabdus nematophila, XENPROT) 88/91 227 2E-38
Regulation     
  rseA-Sigma E factor negative regulator (Serratia proteamaculans, Spro_3674) 66/80 165 7E-16
  tilS-Putative cell cycle protein (P. luminescens, plu0689) 62/81 189 4E-14
  yijC-HTH-type transcriptional repressor (Escherichia coli, EcSMS35_4410) 100/100 129 3E-16
Virulence     
  virH-Putative toxin secretion transporter (Vibrio cholerae, VC0395_A1056) 94/98 230 3E-39
  xhlA-Putative hemolysin protein (X. nematophila, AY640584) 75/86 258 4E-43
  rtxC-RTX toxin activating protein (Vibrio vulnificus, VVA1030) 77/93 210 5E-23
  tcaC-Putative insecticidal toxin complex protein (X. nematophila, AJ308438) 90/95 132 9E-21
Stress response     
  gor-Glutathione reductase (Yersinia pseudotuberculosis, YPTS_4032) 88/94 182 3E-12
  msrA-Peptide methionine sulfoxide reductase (Y. pseudotuberculosis, YPTS_0481) 62/79 179 5E-37
  resP-Putative resistant protein (Enterobacter nickellidurans, AM003901) 86/95 129 1E-15
  surA-Peptidyl-prolyl cis-trans isomerase (P. luminescens, plu0611) 81/93 182 7E-21
  uspB-Universal stress protein (P. luminescens, plu0120) 90/100 100 5E-11
  xkIS-Putative transposase (Nitrosococcus oceani, Noc_1882) 54/66 360 9E-30
  rep-Putative rep protein (Salmonella enteritidis, SeSA_C0001) 77/80 192 3E-21
  res-Putative type III restriction enzyme, res subunit (Bacillus coagulans, BcoaDRAFT_2435) 72/87 261 2E-31
  rpoB-DNA-directed RNA polymerase (Y. pseudotuberculosis, YPTS_0304) 98/100 240 3E-45
  rrmB-16S ribosomal RNA methyltransferase (P. luminescens, plu4252) 88/94 150 3E-18
Metabolism     
- Amino acid synthesis lysC-Aspartate kinase (S. proteamaculans, Spro_4479) 88/93 182 2E-30
- Cofactor biosynthesis ubiE-Ubiquinone biosynthesis O-methyltransferase (S. proteamaculans, Spro_3270) 100/100 107 8E-17
- Cofactor metabolism cobJ-Precorrin-3b c17-methyltransferase (Escherichia blattae, REB001118) 83/91 210 2E-27
- Glyoxylate pathway aceE-Pyruvate dehydrogenase E1 component (P. luminescens, plu3623) 92/96 156 2E-20
  aceK-Bifunctional isocitrate dehydrogenase kinase/phosphatase protein (P. luminescens, plu4394) 88/95 174 2E-22
  dld-D-lactate dehydrogenase (P. luminescens, plu2848) 83/92 251 4E-37
- Lipid synthesis atoB-beta-ketoadipyl CoA thiolase (Escherichia fergusonii, EFER_1599) 100/100 99 2E-05
- Nucleotide synthesis purF-Amidophosphoribosyltransferase (P. luminescens, plu3167) 97/97 111 7E-13
- Protein degradation clpP-ATP-dependent Clp protease proteolytic subunit (Y. enterocolitica, YE3134) 76/88 266 6E-45
- Protein folding trxB-Predicted redox protein, regulator of disulfide bond formation (Yersinia pestis, YP_3227) 88/90 123 2E-12
Nutrition     
- Ion uptake znuA-ABC high-affinity zinc uptake transporter, periplasmic binding protein (P. luminescens, plu2115) 81/87 141 2E-13
- Sugar uptake malF-Maltose ABC transporter, permease protein (P. luminescens, plu0459) 88/93 168 3E-22
Unknown     
  xkst1-Hypothetical protein (Ruminococcus gnavus, RUMGNA_01513) 79/87 141 9E-14
  xkst2-Hypothetical protein (P. luminescens, plu2317) 76/87 162 8E-9
  xkst3-Hypothetical protein (P. luminescens, plu3301) 84/93 165 4E-20
  xkst4-No similarity to known genes    
  xkst5-No similarity to known genes    
  xkst6-No similarity to known genes    
  1. Underlined genes were also upregulated in Photorhabdus temperata during infection of R. majalis. Other genes were exclusively induced in X. koppenhoeferi and similar sequences of double-underlined genes were absent in the genome of P. temperata.