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Table 2 Predicted characteristics of bacterial homologues of pepsin

From: Pepsin homologues in bacteria

Species

Length

Predicted active site residues

Alien_Hunter score (threshold)

Colwellia psychrerythraea

441

D36, Y68, D300

6.975 (14.690)

Marinomonas sp. MWYL1

406

D49, F95, D274

13.692 (13.678)

Shewanella amazonensis

445

D37, Y69, D282

4.976 (13.455)

Shewanella denitrificans

429

D37, Y69, D287

8.983 (10.423)

Shewanella loihica

561

D41, Y73, D399

3.441 (15.338)

Shewanella sediminis

514

D41, Y88, D364

12.942 (15.906)

Sinorhizobium medicae

368

D53,F97,D243

5.649

8.762 (16.612)

  1. Predicted active site residues are numbered according to the translation of the respective coding sequence. The threshold scores for Alien Hunter analysis are given in parenthesis after the raw score; a different threshold exists for each genome analysis. The pepsin homologue in Sinorhizobium medica is derived from a gene that is split between two 5000-residue windows in the Alien Hunter analysis, hence there are two scores.