Table 3 Comparison of genes (or operons) showing differential expression in microarray analysis and identified to have a cep box motif.
From: Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia
Gene | Functiona | cep box motif name or genomic context of downstream geneb | Change (fold) for K56-R2 (cepR) vs K56-2c | Change (fold) for K56-2cciR vs K56-2c | Change (fold) for K56-2cepRcciIR vs K56-2c |
|---|---|---|---|---|---|
BCAL0051 | periplasmic solute-binding protein | MST2001 | -2.1 | 2.5 | NC |
BCAL0052 | putative oxidoreductase | downstream from MST2001 | -2.2 | 2.7 | NC |
BCAL0232 | elongation factor Tu | MST2002 | -2.1 | NC | NC |
BCAL0340 | putative lipoprotein of T6SS | MST005 & MST2004 | -2.8 | NC | NC |
BCAL0341 | putative type VI secretion system protein TssB | downstream from MST005 & MST2004 | -2.5 | NC | -2.1 |
BCAL0342 | putative type VI secretion system protein TssC | downstream from MST005 & MST2004 | -3.1 | NC | -2.3 |
BCAL0343 | putative type VI secretion system protein TssD | downstream from MST005 & MST2004 | -3.2 | 2.1 | NC |
BCAL0344 | putative type VI secretion system protein TssE | downstream from MST005 & MST2004 | -2.7 | NC | NC |
BCAL0345 | putative type VI secretion system protein TssF | downstream from MST005 & MST2004 | -5.1 | 2.8 | -2.1 |
BCAL0346 | putative type VI secretion system protein TssG | downstream from MST005 & MST2004 | -2.9 | 2.1 | -2.1 |
BCAL0347 | putative type VI secretion system protein TssH (ClpB) | downstream from MST005 & MST2004 | NC | 2.1 | NC |
BCAL0348 | putative type VI secretion system protein TssA | downstream from MST005 & MST2004 | -2.7 | 2.1 | -2.2 |
BCAL0831 | putative storage protein | MST2009 | -5.2 | NC | -4.0 |
BCAL0832 | poly-beta-hydroxy-butyrate storage protein PhaA | downstream from MST2009 | -2.4 | NC | NC |
BCAL0833 | putative acetoacetyl-CoA reductase PhbB | downstream from MST2009 | -2.6 | NC | -3.6 |
BCAL0834 | hypothetical protein | downstream from MST2009 | -2.4 | NC | NC |
BCAL0999 | sigma-E factor negative regulatory protein 2 RseA2 | MST2013 | NC | NC | -3.4 |
BCAL1124 | conserved hypothetical protein | MST2014 | 2.0 | NC | NC |
BCAL1354 | conserved hypothetical protein | MST2020 | NC | NC | -2.2 |
BCAL1562 | hypothetical phage protein | MST2024 | NC | 2.7 | NC |
BCAL2871 | sigma-E factor negative regulatory protein 1 RseA1 | MST2036 | NC | NC | NC |
BCAL2870 | sigma-E factor regulatory protein RseB precursor 1 MucB1 | downstream from MST2036 | NC | NC | -3.5 |
BCAL3190 | IclR family regulatory protein | MST2039 | NC | 2.3 | 2.6 |
BCAL3205c | hypothetical protein | MST2040 | -2.0 | NC | NC |
BCAL3419 | 3-dehydroquinate dehydratase AroQ1 | MST2043 | -2.0 | NC | NC |
BCAM1015 | putative porin | MST2050 | -2.3 | NC | NC |
BCAM1405 | levansucrase | MST2055 | -2.9 | NC | NC |
BCAM1502 | hypothetical protein | MST2056 | -2.8 | NC | NC |
BCAM1870 | N-acylhomoserine lactone synthase CepI | MST2059 | -67.0 | NC | -6.9 |
BCAM1871 | hypothetical protein | downstream from MST2059 | -37.6 | NC | -20.2 |
BCAM2502 | 3-dehydroquinate dehydratase AroQ (similar to BCAL3419) | MST2064 | -2.1 | NC | NC |
BCAM2626 | putative heme receptor protein HuvA | MST2066 | 3.4 | -2.2 | 2.7 |
BCAM2627 | putative hemin ABC transport system protein HmuS | downstream from MST2066 | 3.1 | NC | 2.9 |
BCAS0293 | nematocidal protein AidA | MST2069 | -88.7 | NC | -214.9 |
BCAS0292 | hypothetical protein | downstream from MST2069 | -137.3 | NC | -278.2 |
BCAS0409 | zinc metalloprotease ZmpA | MST2070 | -5.3 | 4.0 | -4.5 |