Table 4 Microarray analysis of selected genes showing differential expression in cepR, cciR or cepRcciIR mutants compared to K56-2.
From: Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia
Gene | Functiona | Change (fold) for K56-R2 (cepR) vs K56-2 | Change (fold) for K56-2cciR vs K56-2 | Change (fold) for K56-2cepRcciIR vs K56-2 |
|---|---|---|---|---|
| Â | Â | microarrayb | microarrayb | microarrayb |
BCAL1369 | Sigma factor 70 EcfC (FecI) | 4.6 | NC | 3.0 |
BCAL1370 | Iron uptake regulatory protein FecR | 2.7 | NC | 2.1 |
BCAL1520 | Putative lipoprotein | -2.1 | NC | NC |
BCAL1528 | Flp type pilus assembly protein | -2.1 | NC | NC |
BCAL1530 | Flp type pilus assembly protein | -3.2 | NC | -2.0 |
BCAL1531 | Flp type pilus assembly protein | -2.2 | NC | NC |
BCAL1532 | Flp type pilus assembly protein | NC | NC | -2.2 |
BCAL1533 | Putative lipoprotein | -2.1 | 2.3 | NC |
BCAL1534 | Putative exported protein | -3.3 | 2.6 | NC |
BCAL1368 | Probable porin | -2.4 | 2.5 | -2.1 |
BCAL1677 | Putative type-1 fimbrial protein | -2.3 | 3.1 | NC |
BCAL1688 | sigma factor 70 EcfI (OrbS) | NC | -2.5 | NC |
BCAL1689 | MbtH-like protein OrbH | NC | -2.2 | NC |
BCAL1690 | putative dioxygenase OrbG | NC | NC | 2.5 |
BCAL1692 | iron transport-related membrane protein OrbD | NC | NC | 3.0 |
BCAL1693 | iron transport-related membrane protein OrbF | NC | NC | 2.1 |
BCAL1694 | iron transport-related exported protein OrbB | NC | NC | 2.4 |
BCAL1696 | ornibactin biosynthesis non-ribosomal peptide synthase OrbI | NC | -2.4 | NC |
BCAL1697 | ornibactin biosynthesis non-ribosomal peptide synthase OrbJ | NC | NC | 2.4 |
BCAL1698 | ornibactin biosynthesis protein OrbK | NC | -2.8 | NC |
BCAL1699 | L-ornithine 5-monooxygenase PvdA | NC | -2.8 | NC |
BCAL1700 | ornibactin receptor precursor OrbA | NC | -2.2 | 2.2 |
BCAL1701 | ornibactin synthetase OrbF | NC | NC | 2.2 |
BCAL1702 | ornibactin biosynthesis protein OrbL | NC | NC | 2.5 |
BCAL1722 | Putative exported chitinase | -2.8 | NC | NC |
BCAL2757 | Superoxide dismutase SodB | -2.3 | NC | NC |
BCAL3297 | Ferretin DPS-family DNA-binding protein | -2.8 | NC | -3.8 |
BCAL3298 | Conserved hypothetical protein | -2.1 | NC | -2.8 |
BCAL3299 | Peroxidase/catablase KatB | -2.3 | NC | -4.0 |
BCAM0184 | Lectin | NC | 2.0 | -2.1 |
BCAM0186 | Lectin BclA | -7.5 | 3.1 | -3.2 |
BCAM0233 | ArsR family regulatory protein | NC | -2.0 | NC |
BCAM0238 | Putative ion transporter | NC | 2.0 | NC |
BCAM0239a | N-acylhomoserine lactone synthase CciI | NC | 52.1 | NC |
BCAM0240 | N-acylhomoserine lactone dependent regulatory protein CciR | NC | 4.0 | -23.5 |
BCAM0949 | Exported lipase LipA | -3.1 | NC | NC |
BCAM0950 | Lipase chaperone LipB | -2.5 | NC | NC |
BCAM1869 | Conserved hypothetical protein | -5.9 | NC | NC |
BCAM1871 | Conserved hypothetical protein | -37.6 | NC | -20.2 |
BCAM2307 | Zinc metalloprotease ZmpB | -2.3 | 2.1 | -2.4 |
pBCA055 | Putative membrane protein | -12.0 | 2.4 | -9.1 |