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Table 1 Significantly altered processes or protein families according to the changes in gene expression level in symptomatic compared to asymptomatic grapevine leaf samples.

From: 'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine

Upregulated processes/protein families

Number of genes

p-value

Downregulated processes/protein families

Number of genes

p-value

Cell organization

24

4.0 × 10-4

Photosynthesis

97

< 10-20

Cell wall

55

1.0 × 10-4

   TCA/org. transformation-carbonic anhydrases

4

4.6 × 10-3

β-1,3 glucan hydrolases

10

1.1 × 10-2

N-metabolism

6

3.5 × 10-2

Biotic stress

41

4.2 × 10-3

   N-metabolism - ammonia metabolism - glutamate synthase

3

8.4 × 10-3

   Secondary metabolism - flavonoids

15

1.2 × 10-3

   Secondary metabolism - isoprenoids terpenoids

3

5.3 × 10-3

   Secondary metabolism - chalcones

4

1.3 × 10-2

   Protein assembly and cofactor ligation

5

9 × 10-3

Amino acid metabolism

47

5 × 10-2

   Protein-synthesis - plastid protein

5

3.1 × 10-2

   Amino acid metabolism -degradation - aspartate family - methionine

5

7.7 × 10-3

   Protein-folding

12

3.8 × 10-2

   Amino acid metabolism - synthesis

23

1.9 × 10-2

   GDSL-motif lipase

8

2.9 × 10-2

   Protein degradation - subtilases

3

2.0 × 10-2

   Transport-ABC transporters and multidrug resistance systems

9

3.6 × 10-2

Minor charbohydrate metabolism

22

1.4 × 10-2

   DNA unspecified

4

3.2 × 10-2

   Major charbohydrate metabolism - degradation - sucrose

5

1.6 × 10-2

   RNA - regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family

8

2.3 × 10-2

   RNA - regulation of transcription - GRAS transcription factor family

4

3.0 × 10-2

   Regulation of transcription - MYB-related transcription factor family

11

5.8 × 10-5

Development

41

3.1 × 10-2

   Regulation of transcription - Aux/IAA family

12

1.3 × 10-3

Glycolysis

20

9.8 × 10-4

   
  1. The results are part of the MapMan gene ontology showing numbers of genes annotated to each process or family (indent) and corresponding p-values (as calculated by MapMan Wilcoxon rank sum test).