Table 1 Parametric gene set enrichment analysis of GO classes and KEGG pathways
From: Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae
GO category | p-value | KEGG pathway | p-value |
|---|---|---|---|
0% vs. 0.5 or 1.0% | Â | 0% vs. 0.5 or 1.0% | Â |
Sterol transport | 2.83E-08 | Oxidative phosphorylation | 6.63E-12 |
Pheromone-dependent signal transduction during conjugation with cellular fusion | 5.20E-06 | Arginine and proline metabolism | 1.59E-09 |
Aerobic respiration | 0.0009 | Glutathione metabolism | 1.26E-05 |
Glutamate biosynthetic process | 0.0015 | Citrate cycle (TCA cycle) | 1.74E-05 |
Tricarboxylic acid cycle | 0.0025 | MAPK signalling pathway | 2.87E-05 |
Exocytosis | 0.0065 | Â | Â |
0% vs. 2.8% | Â | 0% vs. 2.8% | Â |
Sterol transport | 1.67E-07 | Arginine and proline metabolism | 2.50E-13 |
Pheromone-dependent signal transduction during conjugation with cellular fusion | 8.38E-06 | Citrate cycle (TCA cycle) | 4.65E-07 |
Glutamate biosynthetic process | 7.23E-05 | MAPK signalling pathway | 0.0002 |
Tricarboxylic acid cycle | 0.0006 | Porphyrin metabolism | 0.0009 |
Aerobic respiration | 0.0032 | Sulphur metabolism | 0.0039 |
Exocytosis | 0.0056 | Â | Â |
0% vs. 20.9% | Â | 0% vs. 20.9% | Â |
Response to stress | 1.54E-06 | Glyoxylate and dicarboxylate metabolism | 2.77E-17 |
Sterol transport | 2.27E-05 | Citrate cycle (TCA cycle) | 3.16E-12 |
Meiosis | 0.0008 | Bile acid biosynthesis | 3.05E-08 |
NADH oxidation | 0.0025 | Ascorbate and aldarate metabolism | 5.83E-07 |
Sporulation | 0.0063 | Nucleotide sugars metabolism | 3.18E-05 |
Sphingolipid biosynthetic process | 0.0075 | Propanoate metabolism | 7.84E-05 |
| Â | Â | Fatty acid metabolism | 0.0002 |
| Â | Â | Pentose phosphate pathway | 0.0004 |
0.5% vs. 1.0% | Â | 0.5% vs. 1.0% | Â |
0.5 or 1.0% vs. 2.8% | Â | 0.5 or 1.0% vs. 2.8% | Â |
| Â | Â | Glyoxylate and dicarboxylate metabolism | 6.15E-20 |
| Â | Â | Fatty acid metabolism | 0.0001 |
| Â | Â | Porphyrin metabolism | 0.0002 |
0.5 or 1.0% vs. 20.9% | Â | 0.5 or 1.0% vs. 20.9% | Â |
Sporulation (sensu Fungi) | 0.0015 | Â | Â |
Pheromone-dependent signal transduction during conjugation with cellular fusion | 0.0027 | Â | Â |
Meiosis | 0.0048 | Â | Â |
2.8% vs. 20.9% | Â | 2.8% vs. 20.9% | Â |
Response to stress | 1.1E-12 | Glyoxylate and dicarboxylate metabolism | 3.93E-06 |
Sporulation (sensu Fungi) | 0.0003 | Phenylalanine metabolism | 0.0064 |
Protein folding | 0.0013 | Amino sugars metabolism | Â |
Pheromone-dependent signal transduction during conjugation with cellular fusion | 0.0017 | Â | Â |
SRP-dependent co-translational protein targeting to membrane, translocation | 0.0019 | Â | Â |
Hexose transport | 0.0032 | Â | Â |
Iron ion homeostasis | 0.0077 | Â | Â |