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Table 1 BAC fingerprinting and FPC assembly statistics

From: A first generation BAC-based physical map of the rainbow trout genome

Number of clones fingerprinted

192,096

~10.4× genome coverage

Used in FPC assembly

154,439

~8.3× genome coverage

Average insert size (Kb)

130

 

Average number of fragments per clone

76.4

 

Estimated average fragment size (Kb)

1.7

 

Number of clones in contigs

145,060

~7.8× genome coverage

Number of contigs

4,173

 

Average number of clones per contig

34.76

 

Average contig size in consensus bands

284

 

Estimated average contig size (Kb)

482

 

Number of Q contigs

811

19.4%

Number of Q clones

1,986

1.4%

Number of CB in contigs

1,185,157

 

Estimate total length in contigs (Kb)

2,000

70% - 80% genome size