A first generation BAC-based physical map of the rainbow trout genome

BMC Genomics

Table 2 Assembly of BACs positive to gene probes and the agarose HindIII fingerprinting of Palti et al. [5].

Gene	Major Contig	No. of Clones	Other Contigs^a	Failed^b
1. a1-mg-1	4410	5		1
2. CXC-R4	1145	8	1 (348)	1
3. DAB	Singleton	1
4. fabp7b	2908	5	4 (1658), 1 (566)	2
5. GH2-1	228	10		2
6. GH2-2	560	4
7. GTPBP-Gi-1	2715	5		1
8. GTPBP-Gi-2^c	4594	7	1 (247)
9. GTPBP-Gi-3^c	4594	3		1
10. GTPBP-Gi-4	608	5
11. Hep-1	336	17	1 (9737)	4
12. Hep-2	12	7
13. HSZFP238-a	1304	16		2
14. HSZFP238-b	3300	2
15. ID1B	1492	16		2
16. ID1C-1	2759	3		2
17. Irp-1A-1	2251	9		2
18. Irp-1A-2	1106	7	1 (761)	3
19. MHCIa-1	3093	8	1 (450), 1 (1607), 1 (1937)	3
20. MHCIa-2	84	9	1 (1304)	1
21 MHCIa-3	959	8	1 (3816)
22. NPY-1	5683	4
23. NPY-2	3205	2
24. RP-S16-a	2361	5		2
25. RP-S16-b	1657	3
26. SCAR163	3249	9		1
27. TAP1	260	11		3
Total:		189 (93%)	14 (7%)	33 (14%)

^aThe contig numbers are in parenthesis.
^bClones that were not fingerprinted successfully and did not pass the editing step of the analysis.
^cGTPBP-Gi-2 and GTPBP-Gi-3 appear tightly linked on contig 4594, but the respective positive BACs do not overlap. This may be caused by local tandem duplication of this locus.

ISSN: 1471-2164