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Table 2 Assembly of BACs positive to gene probes and the agarose HindIII fingerprinting of Palti et al. [5].

From: A first generation BAC-based physical map of the rainbow trout genome

Gene Major Contig No. of Clones Other Contigsa Failedb
1. a1-mg-1 4410 5   1
2. CXC-R4 1145 8 1 (348) 1
3. DAB Singleton 1   
4. fabp7b 2908 5 4 (1658), 1 (566) 2
5. GH2-1 228 10   2
6. GH2-2 560 4   
7. GTPBP-Gi-1 2715 5   1
8. GTPBP-Gi-2c 4594 7 1 (247)  
9. GTPBP-Gi-3c 4594 3   1
10. GTPBP-Gi-4 608 5   
11. Hep-1 336 17 1 (9737) 4
12. Hep-2 12 7   
13. HSZFP238-a 1304 16   2
14. HSZFP238-b 3300 2   
15. ID1B 1492 16   2
16. ID1C-1 2759 3   2
17. Irp-1A-1 2251 9   2
18. Irp-1A-2 1106 7 1 (761) 3
19. MHCIa-1 3093 8 1 (450), 1 (1607), 1 (1937) 3
20. MHCIa-2 84 9 1 (1304) 1
21 MHCIa-3 959 8 1 (3816)  
22. NPY-1 5683 4   
23. NPY-2 3205 2   
24. RP-S16-a 2361 5   2
25. RP-S16-b 1657 3   
26. SCAR163 3249 9   1
27. TAP1 260 11   3
Total:   189 (93%) 14 (7%) 33 (14%)
  1. aThe contig numbers are in parenthesis.
  2. bClones that were not fingerprinted successfully and did not pass the editing step of the analysis.
  3. cGTPBP-Gi-2 and GTPBP-Gi-3 appear tightly linked on contig 4594, but the respective positive BACs do not overlap. This may be caused by local tandem duplication of this locus.