From: The word landscape of the non-coding segments of the Arabidopsis thaliana genome
 | 3'UTRs | 5'UTRs | Intron | Core Promoters | Proximal Promoters | Distal Promoters | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Regulatory Element from AGRIS database[25] | Rank | Score | Rank | Score | Rank | Score | Rank | Score | Rank | Score | Rank | Score |
Bellringer/replumless/pennywise BS3 IN AG | - | - | - | - | 43503 | 0.0479784 | - | - | 64618 | 0.955909 | 56341 | -103.557 |
CBF1 BS in cor15a | - | - | - | - | 48346 | -1.48116 | - | - | 4852 | 1.34988 | 11624 | 24.1708 |
Octamer promoter motif | - | - | - | - | 41435 | 0.673899 | - | - | 11935 | 1.28979 | 23858 | 4.69741 |
Bellringer/replumless/pennywise BS1 IN AG | 72 | 67.6311 | 352 | 35.2087 | 574 | 127.468 | 19 | 117.144 | 875 | 1.0759 | 58337 | -186.12 |
ABRE-like binding site motif | 5445 | 11.7462 | 1138 | 21.7556 | 15242 | 16.0488 | 304 | 41.9698 | 53 | 1.45099 | 109 | 255.929 |
G-box promoter motif | 1852 | 21.1577 | 1138 | 21.7556 | 12023 | 20.8282 | 304 | 41.9698 | 53 | 1.45099 | 102 | 260.604 |
DPBF1&2 binding site motif | 3720 | 14.7278 | 2963 | 13.7441 | 3460 | 54.8094 | 355 | 39.8827 | 137 | 1.36496 | 102 | 260.604 |
MYB1 binding site motif | 4306 | 13.6223 | 446 | 32.0594 | 1407 | 86.7638 | 400 | 38.3647 | 1785 | 1.11027 | 2557 | 76.5745 |
RAV1-A binding site motif | 568 | 34.0603 | 148 | 49.0095 | 2000 | 73.6726 | 451 | 36.3111 | 135 | 1.20169 | 289 | 186.355 |
W-box promoter motif | 751 | 30.7769 | 675 | 27.0198 | 458 | 139.172 | 533 | 34.175 | 176 | 1.19182 | 756 | 131.24 |
CBF2 binding site motif and GBF1/2/3 BS in ADH1 | - | - | - | - | 34949 | 2.87187 | 540 | 34.0562 | 729 | 1.293 | 998 | 117.554 |
ARF and ARF1 binding site motif | 976 | 27.5809 | 216 | 42.5544 | 741 | 116.214 | 568 | 33.5619 | 2852 | 1.07934 | 2306 | 80.856 |
L1-box promoter motif | 2697 | 17.6326 | - | - | 5824 | 38.2912 | 585 | 33.083 | 2889 | 1.05367 | 2235 | 81.9035 |
GATA promoter motif | 1186 | 25.6353 | 741 | 26.1103 | 1247 | 91.6715 | 802 | 29.355 | 355 | 1.08161 | 1033 | 115.612 |
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | 1757 | 21.6648 | 1225 | 20.9254 | 2890 | 60.5806 | 908 | 27.9139 | 1313 | 1.12688 | 3204 | 67.6808 |
SORLIP2 | 3658 | 14.8663 | 9024 | 6.91197 | 16361 | 14.6754 | 1006 | 26.5383 | 550 | 1.34186 | 780 | 129.375 |
MYB binding site promoter | 4762 | 12.8183 | 2462 | 15.1743 | 1897 | 75.734 | 1032 | 26.1692 | 4931 | 1.06605 | 2010 | 86.739 |
CCA1 binding site motif | 1230 | 25.1325 | 371 | 34.5029 | 5202 | 41.532 | 1225 | 24.4536 | 61990 | 0.99765 | 58013 | -161.161 |
TGA1 binding site motif | - | - | 13290 | 4.96662 | 10326 | 24.0526 | 1233 | 24.3919 | 1660 | 1.21323 | 1879 | 89.7072 |
SORLIP1 | 5297 | 11.9625 | 6172 | 9.0064 | 11076 | 22.5348 | 1286 | 23.8899 | 4965 | 1.15533 | 4097 | 58.1886 |
T-box promoter motif | 639 | 32.6567 | 1532 | 19.0267 | 774 | 114.265 | 1325 | 23.5609 | 193 | 1.27522 | 205 | 212.153 |
Ibox promoter motif | 2156 | 19.649 | 358 | 35.0463 | 3223 | 57.1901 | 1797 | 20.4507 | 1081 | 1.14622 | 628 | 140.679 |
Box II promoter motif | 1403 | 23.9863 | 4993 | 10.3195 | 1437 | 85.6577 | 1804 | 20.4254 | 1986 | 1.30314 | 669 | 136.891 |
Hexamer promoter motif | 7590 | 9.4166 | 1616 | 18.5991 | 10347 | 24.0156 | 2225 | 18.6568 | 3477 | 1.24419 | 1252 | 107.567 |
AtMYC2 BS in RD22 | 1193 | 25.5614 | 4026 | 11.6309 | 3460 | 54.8094 | 2823 | 16.6193 | 646 | 1.21499 | 2073 | 85.133 |
RAV1-B binding site motif | 7054 | 9.94571 | 8250 | 7.4051 | 11589 | 21.6087 | 2996 | 16.0975 | 6084 | 1.12709 | 2017 | 86.5658 |
RY-repeat promoter motif | 182 | 49.4382 | - | - | 530 | 132.253 | 3097 | 15.8378 | 72 | 1.29305 | 61 | 302.629 |
MYB3 binding site motif | 5128 | 12.2348 | 10575 | 6.06616 | 1407 | 86.7638 | 3292 | 15.3953 | 3288 | 1.08324 | 11546 | 24.3649 |
Bellringer/replumless/pennywise BS2 IN AG | 3126 | 16.2923 | - | - | 64424 | -30.4349 | 3694 | 14.5011 | 62777 | 0.97976 | 58184 | -172.62 |
AtMYB2 BS in RD22 | 6797 | 10.1949 | 9630 | 6.55608 | 4961 | 42.997 | 4480 | 13.0383 | 3570 | 1.07359 | 3218 | 67.5209 |
E2F binding site motif and E2F/DP BS in AtCDC6 | - | - | 4078 | 11.5443 | 46644 | -0.929602 | 4953 | 12.223 | 60966 | 1.20703 | 55143 | -85.466 |
ERF1 BS in AtCHI-B and GCC-box promoter motif | - | - | 681 | 26.9446 | 20822 | 10.4265 | 6359 | 10.5016 | 4340 | 1.35349 | 1735 | 93.0802 |
Z-box promoter motif | - | - | - | - | 36029 | 2.48082 | 10144 | 7.62515 | 39199 | 1.00107 | 26784 | 1.42726 |
LTRE promoter motif | - | - | 6230 | 8.95512 | 16036 | 15.0374 | 11248 | 7.01938 | 11296 | 1.13624 | 7155 | 38.6247 |
SORLIP5 | 5170 | 12.1706 | 3175 | 13.3137 | 14017 | 17.6817 | 11614 | 6.82909 | 14984 | 1.04471 | 22267 | 6.5221 |
ABFs and ABRE binding site motif | 8540 | 8.6035 | 6266 | 8.92287 | 29109 | 5.33319 | 12250 | 6.52158 | 725 | 1.25598 | 1490 | 100.349 |
PI promoter motif | 9436 | 7.96403 | - | - | 60410 | -9.96838 | 14596 | 5.56209 | 24540 | 1.01231 | 7902 | 35.621 |