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Table 19 AGRIS Lookup

From: The word landscape of the non-coding segments of the Arabidopsis thaliana genome

  3'UTRs 5'UTRs Intron Core Promoters Proximal Promoters Distal Promoters
Regulatory Element from AGRIS database[25] Rank Score Rank Score Rank Score Rank Score Rank Score Rank Score
Bellringer/replumless/pennywise BS3 IN AG - - - - 43503 0.0479784 - - 64618 0.955909 56341 -103.557
CBF1 BS in cor15a - - - - 48346 -1.48116 - - 4852 1.34988 11624 24.1708
Octamer promoter motif - - - - 41435 0.673899 - - 11935 1.28979 23858 4.69741
Bellringer/replumless/pennywise BS1 IN AG 72 67.6311 352 35.2087 574 127.468 19 117.144 875 1.0759 58337 -186.12
ABRE-like binding site motif 5445 11.7462 1138 21.7556 15242 16.0488 304 41.9698 53 1.45099 109 255.929
G-box promoter motif 1852 21.1577 1138 21.7556 12023 20.8282 304 41.9698 53 1.45099 102 260.604
DPBF1&2 binding site motif 3720 14.7278 2963 13.7441 3460 54.8094 355 39.8827 137 1.36496 102 260.604
MYB1 binding site motif 4306 13.6223 446 32.0594 1407 86.7638 400 38.3647 1785 1.11027 2557 76.5745
RAV1-A binding site motif 568 34.0603 148 49.0095 2000 73.6726 451 36.3111 135 1.20169 289 186.355
W-box promoter motif 751 30.7769 675 27.0198 458 139.172 533 34.175 176 1.19182 756 131.24
CBF2 binding site motif and GBF1/2/3 BS in ADH1 - - - - 34949 2.87187 540 34.0562 729 1.293 998 117.554
ARF and ARF1 binding site motif 976 27.5809 216 42.5544 741 116.214 568 33.5619 2852 1.07934 2306 80.856
L1-box promoter motif 2697 17.6326 - - 5824 38.2912 585 33.083 2889 1.05367 2235 81.9035
GATA promoter motif 1186 25.6353 741 26.1103 1247 91.6715 802 29.355 355 1.08161 1033 115.612
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 1757 21.6648 1225 20.9254 2890 60.5806 908 27.9139 1313 1.12688 3204 67.6808
SORLIP2 3658 14.8663 9024 6.91197 16361 14.6754 1006 26.5383 550 1.34186 780 129.375
MYB binding site promoter 4762 12.8183 2462 15.1743 1897 75.734 1032 26.1692 4931 1.06605 2010 86.739
CCA1 binding site motif 1230 25.1325 371 34.5029 5202 41.532 1225 24.4536 61990 0.99765 58013 -161.161
TGA1 binding site motif - - 13290 4.96662 10326 24.0526 1233 24.3919 1660 1.21323 1879 89.7072
SORLIP1 5297 11.9625 6172 9.0064 11076 22.5348 1286 23.8899 4965 1.15533 4097 58.1886
T-box promoter motif 639 32.6567 1532 19.0267 774 114.265 1325 23.5609 193 1.27522 205 212.153
Ibox promoter motif 2156 19.649 358 35.0463 3223 57.1901 1797 20.4507 1081 1.14622 628 140.679
Box II promoter motif 1403 23.9863 4993 10.3195 1437 85.6577 1804 20.4254 1986 1.30314 669 136.891
Hexamer promoter motif 7590 9.4166 1616 18.5991 10347 24.0156 2225 18.6568 3477 1.24419 1252 107.567
AtMYC2 BS in RD22 1193 25.5614 4026 11.6309 3460 54.8094 2823 16.6193 646 1.21499 2073 85.133
RAV1-B binding site motif 7054 9.94571 8250 7.4051 11589 21.6087 2996 16.0975 6084 1.12709 2017 86.5658
RY-repeat promoter motif 182 49.4382 - - 530 132.253 3097 15.8378 72 1.29305 61 302.629
MYB3 binding site motif 5128 12.2348 10575 6.06616 1407 86.7638 3292 15.3953 3288 1.08324 11546 24.3649
Bellringer/replumless/pennywise BS2 IN AG 3126 16.2923 - - 64424 -30.4349 3694 14.5011 62777 0.97976 58184 -172.62
AtMYB2 BS in RD22 6797 10.1949 9630 6.55608 4961 42.997 4480 13.0383 3570 1.07359 3218 67.5209
E2F binding site motif and E2F/DP BS in AtCDC6 - - 4078 11.5443 46644 -0.929602 4953 12.223 60966 1.20703 55143 -85.466
ERF1 BS in AtCHI-B and GCC-box promoter motif - - 681 26.9446 20822 10.4265 6359 10.5016 4340 1.35349 1735 93.0802
Z-box promoter motif - - - - 36029 2.48082 10144 7.62515 39199 1.00107 26784 1.42726
LTRE promoter motif - - 6230 8.95512 16036 15.0374 11248 7.01938 11296 1.13624 7155 38.6247
SORLIP5 5170 12.1706 3175 13.3137 14017 17.6817 11614 6.82909 14984 1.04471 22267 6.5221
ABFs and ABRE binding site motif 8540 8.6035 6266 8.92287 29109 5.33319 12250 6.52158 725 1.25598 1490 100.349
PI promoter motif 9436 7.96403 - - 60410 -9.96838 14596 5.56209 24540 1.01231 7902 35.621
  1. Observations about the regulatory elements (length = 8) contained in the AGRIS database [25].