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Table 1 SFP detection among three varieties of cultivated tomato and sequence validation

From: Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

Stringency of confidence interval Validation rate1 No. of SFPs Total2
   FL7600 vs. OH9242 FL7600 vs. PI114490 OH9242 vs. PI114490  
α ≤ 10-2 60% 3467 (2080)3 3725 (2235) 3585 (2151) 8518 (5111)
α ≤ 10-3 63% 1023 (644) 1493 (941) 1336 (842) 2970 (1871)
α ≤ 10-4 71% 435 (309) 823 (584) 736 (523) 1481 (1052)
α ≤ 10-5 74% 217 (161) 523 (387) 490 (363) 885 (655)
α ≤ 10-6 76% 135 (103) 402 (306) 336 (255) 629 (478)
α ≤ 10-7 75% 95 (71) 284 (213) 263 (197) 458 (344)
  1. 1Validation rate was calculated based on the sequence data for 189 putative SFPs
  2. 2Number of SFPs across all three two-way comparisons without redundancy
  3. 3 Number in parenthesis indicates the number of SFPs corrected by the corresponding validation rate