Skip to main content

Table 3 Summary statistics of Ka and Ks for 20 loci with multiple SNPs

From: Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

Locus SFP sequence ID SGN unigene ID1 Chromosome No. of SNPs Ka Ks Ka/Ks SGN annotation
Le011123 Le011123 SGN-U598411 1 4 (3)2 0.009 0.016 0.579 dehydration-responsive related protein
Le006895 Le006895 SGN-U569640 2 4 (4) 0.009 0.006 1.412 cytochrome P450 76C2
Rcr3 Le013093 SGN-U331451 2 10 (4) 0.009 0.013 0.692 cysteine protease (Rcr3)
Le013887 Le013887 SGN-U600765 2 7 (4) 0.008 0.119 0.063 unknown
Le002348 Le002348 SGN-U588569 3 4 (4) 0.007 0.051 0.137 lipid transfer protein 6 (LTP6)
LEOH8 Le009961 SGN-U313561 3 4 (4) 0.002 0.018 0.111 plasma membrane intrinsic protein 2A (PIP2A)
Le013904 Le013904 SGN-U571948 3 4 (4) 0.016 0.000 > 1 unknown
Le001310 Le001310 SGN-U312733 4 4 (1) 0.010 0.049 0.203 ribosomal protein L17
Le006853 Le006853 SGN-U585308 4 5 (4) 0.007 0.055 0.121 oligopeptide transporter OPT protein
Le013946 Le013946 SGN-U342731 4 6 (6) 0.016 0.000 > 1 fertility restorer-like protein
LEOH38 Le003743 SGN-U314789 5 5 (5) 0.007 0.011 0.636 ripening regulated protein (DDTFR6/A)
Le004790 Le004790 SGN-U566816 5 4 (3) 0.015 0.000 > 1 ubiquinol-cytochrome C chaperone protein
Le007111 Le007111 SGN-U577041 5 4 (4) 0.060 0.000 > 1 unknown
Le009852 Le009852 SGN-U577041 5 8 (2) 0.000 0.059 0.000 unknown
LEOH35 Le003313 SGN-U318485 9 8 (8) 0.014 0.023 0.609 photosystem II reaction centre W (PsbW)
LEOH31 Le004579 SGN-U317091 9 10 (9) 0.007 0.057 0.123 putative chlorophyll synthetase
Le000343 Le000343 SGN-U578047 unknown 4 (4) 0.000 0.000 0.000 metallothionein-like protein type 2
Le005230 Le005230 SGN-U585097 unknown 4 (3) 0.009 0.033 0.280 nuclear transport factor 2 (NTF2)
Le006861 Le006861 SGN-U578820 unknown 18 (4) 0.004 0.014 0.286 phosphatidylinositol-4-phosphate 5-kinase
Le011957 Le011957 SGN-U589331 unknown 4 (4) 0.015 0.016 0.904 phosphoinositide-specific phospholipase C
  1. 1SOL Genomics Network (SGN:http://solgenomics.net/) unigene ID
  2. 2Number in parenthesis indicates the number of SNPs in an open reading frame (OFR) of each locus