Table 3 Summary statistics of Ka and Ks for 20 loci with multiple SNPs
Locus | SFP sequence ID | SGN unigene ID1 | Chromosome | No. of SNPs | Ka | Ks | Ka/Ks | SGN annotation |
|---|---|---|---|---|---|---|---|---|
Le011123 | Le011123 | SGN-U598411 | 1 | 4 (3)2 | 0.009 | 0.016 | 0.579 | dehydration-responsive related protein |
Le006895 | Le006895 | SGN-U569640 | 2 | 4 (4) | 0.009 | 0.006 | 1.412 | cytochrome P450 76C2 |
Rcr3 | Le013093 | SGN-U331451 | 2 | 10 (4) | 0.009 | 0.013 | 0.692 | cysteine protease (Rcr3) |
Le013887 | Le013887 | SGN-U600765 | 2 | 7 (4) | 0.008 | 0.119 | 0.063 | unknown |
Le002348 | Le002348 | SGN-U588569 | 3 | 4 (4) | 0.007 | 0.051 | 0.137 | lipid transfer protein 6 (LTP6) |
LEOH8 | Le009961 | SGN-U313561 | 3 | 4 (4) | 0.002 | 0.018 | 0.111 | plasma membrane intrinsic protein 2A (PIP2A) |
Le013904 | Le013904 | SGN-U571948 | 3 | 4 (4) | 0.016 | 0.000 | > 1 | unknown |
Le001310 | Le001310 | SGN-U312733 | 4 | 4 (1) | 0.010 | 0.049 | 0.203 | ribosomal protein L17 |
Le006853 | Le006853 | SGN-U585308 | 4 | 5 (4) | 0.007 | 0.055 | 0.121 | oligopeptide transporter OPT protein |
Le013946 | Le013946 | SGN-U342731 | 4 | 6 (6) | 0.016 | 0.000 | > 1 | fertility restorer-like protein |
LEOH38 | Le003743 | SGN-U314789 | 5 | 5 (5) | 0.007 | 0.011 | 0.636 | ripening regulated protein (DDTFR6/A) |
Le004790 | Le004790 | SGN-U566816 | 5 | 4 (3) | 0.015 | 0.000 | > 1 | ubiquinol-cytochrome C chaperone protein |
Le007111 | Le007111 | SGN-U577041 | 5 | 4 (4) | 0.060 | 0.000 | > 1 | unknown |
Le009852 | Le009852 | SGN-U577041 | 5 | 8 (2) | 0.000 | 0.059 | 0.000 | unknown |
LEOH35 | Le003313 | SGN-U318485 | 9 | 8 (8) | 0.014 | 0.023 | 0.609 | photosystem II reaction centre W (PsbW) |
LEOH31 | Le004579 | SGN-U317091 | 9 | 10 (9) | 0.007 | 0.057 | 0.123 | putative chlorophyll synthetase |
Le000343 | Le000343 | SGN-U578047 | unknown | 4 (4) | 0.000 | 0.000 | 0.000 | metallothionein-like protein type 2 |
Le005230 | Le005230 | SGN-U585097 | unknown | 4 (3) | 0.009 | 0.033 | 0.280 | nuclear transport factor 2 (NTF2) |
Le006861 | Le006861 | SGN-U578820 | unknown | 18 (4) | 0.004 | 0.014 | 0.286 | phosphatidylinositol-4-phosphate 5-kinase |
Le011957 | Le011957 | SGN-U589331 | unknown | 4 (4) | 0.015 | 0.016 | 0.904 | phosphoinositide-specific phospholipase C |