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Table 1 IS family diversity in three Frankia strains

From: Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia

IS Family1

Unique to CcI3

Unique to EAN

Unique to ACN

In EAN and CcI3 only2

In ACN and either EAN or CcI33

In all three

IS3

2

11

-

-

-

-

IS4

7

10

-

63

1

25

IS5

-

-

-

2

-

-

IS6

-

1

-

1

-

1

IS30

-

-

-

2

-

1

IS66

-

-

-

16

-

1

IS110

-

9

-

5

1

7

IS200

-

2

-

8

-

-

IS605

-

9

-

6

-

13

IS630

-

-

-

4

1

15

ISL3

1

-

-

-

-

5

Mutator

-

5

-

-

-

-

Tn3

-

-

-

1

2

3

Unclassified Transposase

4

16

5

35

7

32

Cutoff4

15

6

3

-

-

-

Total

29

69

8

143

12

103

  1. 1 Determined from annotationing transposase ORFs for EAN and CcI3. ACN transposases were reannotated after the BLAST search to show IS family diversity of transposase ORFs, as all transposases were originally annotated as "putative." Transposases in EAN and CcI3 were not reannotated.
  2. 2 Transposase ORFs that hit other ORFs in EAN and CcI3 but not in ACN.
  3. 3 Transposase ORFs that hit other ORFs in ACN and one of the other two strains, but not in all three Frankia strains.
  4. 4 The number of transposase ORFs in each strain that did not hit any sequence in the nr database with an E-value smaller than 10-15. In all cases this was due to a sequence size of less than 80 amino acids.