Strain | Area1 | Transposases2 | p value3 | Duplicated genes4 |
|---|
EAN | 5964668 (66%) | 223 (86%) | 1.28 × 10-3 | 262 (306) * |
CcI3 | 2418797 (45%) | 134 (67%) | 2.18 × 10-6 | 18 (28) |
- 1 The number of nucleotides in regions of the strain that did not show MAUVE alignment synteny with strain ACN in a continuous 10 kb+ stretch. Numbers in parentheses indicate the percentage of the genome to which these stretches correspond.
- 2 The number of transposase ORFs in the breaks in synteny. Numbers in parentheses indicate the percentage of all transposases in the strain that were found, including those identified in the PSI-TBLASTN search.
- 3 P value derived from a Chi squared test of the number of transposases in the region against an expected number.
- 4 The number of the top 3 duplicated gene family ORFs in each respective strain that were not transposases in this region. Numbers in parentheses are the total number of duplicated genes of the three top duplicated gene families in that strain. (*) indicates a p value less than 0.005.
