| Filter applied1 | Pass Filter | (%) | GATC start (%) |
---|
Pre-selection
| l32 n. | 107888201 | 94.48 | 24.78 |
Assembly
| l32 n. q20 o230 | 27979963 | 24.50 | 46.64 |
SNP
| l32 n. q10 o230 | 32941906 | 28.84 | 40.23 |
- 1 sequences are filtered for length 32, without base-call errors (n or .). Singly represented reads are required to have a per base-call quality score of 20 (assembly data set) or 10 (SNP data set). Sequences more than four times overrepresented, based on the expected 56× coverage, were discarded.