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Table 2 Short read assembly results.

From: Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

 

algorithm1 and non-default parameters

 

edena -c 33 -m 16

velvet 152

SSAKE

contigs

230741

24

627600

assembled reads

8965681

NA

13964267

assembly length

17487533

2812

36163074

N50

90

129

53

  1. 1algorithm versions were: edena-2.1.1, velvet_0.3, SSAKE_v2.0
  2. 2parameter applies to hash_length
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BMC Genomics

ISSN: 1471-2164

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