|  |  | nt flanking sequence1 |
---|
reference2 | Contigs | SNPs | 40/40 | 20/20 | 2/40 |
---|
c50
| 209623 | 7609 | 2254 | 5218 | 6454 |
c50ca
| 195928 | 7930 | 2760 | 5636 | 6834 |
c50caB
| 192731 | 11287 | 5620 | 8902 | 10125 |
- 140/40 refers to SNPs that are flanked on both sides by at least 40 nucleotides of genomic sequence.
- 20/20 refers to SNPs that are flanked on both sides by at least 20 nucleotides of genomic sequence.
- 2/40 refers to SNPs that have at least 2 nucleotides flanking sequence on one side and at least 40 nucleotides on the other.
- 2c50 refers to reference genome consisting of short read contigs of 50 bp or more
- c50ca is extended genome assembly based on chicken alignment
- c50caB is extended genome assembly based on chicken alignment and turkey BES.