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Table 1 Selection of probe sets from each section of the Venn diagram with a PPLR greater than 0.999 and/or less than 0.001.

From: Expulsion of Trichuris muris is associated with increased expression of angiogenin 4 in the gut and increased acidity of mucins within the goblet cell

   

PPLR Value

Probe Set ID

Gene Symbol

Gene Description

E v N

S v N

S v E

A. Probe sets of PPLR > 0.999 or < 0.001 in E v N only

   

1417655_a_at

Ars2

arsenate_resistance_protein_2

0.999501

0.887027

0.005792

1418652_at

Cxcl9

chemokine_(C-X-C_motif)_ligand_9

0.999702

0.997352

0.083513

1449102_at

Ebf2

early_B-cell_factor_2

9.14E-04

0.001533

0.670498

1435906_x_at

Gbp2

guanylate_nucleotide_binding_protein_2

0.999957

0.920883

0.003407

1419060_at

Gzmb

granzyme_B

0.999274

0.834789

0.004865

1425477_x_at

H2-Ab1

histocompatibility_2,_class_II_antigen_A,_beta_1

0.999653

0.917835

0.009449

1420437_at

Indo

indoleamine-pyrrole_2,3_dioxygenase

0.999996

0.998805

0.057528

1447927_at

Mpa2l

macrophage_activation_2_like

0.999643

0.721523

0.002485

B. Probe sets of PPLR > 0.999 or < 0.001 in E v N and S v N

   

1425519_a_at

Cd74

CD74_antigen_(invariant_polypeptide_of_major_histo

compatibility_complex,_class_II_antigen-associated)

1

0.999649

0.002733

1456612_at

Il17d

Interleukin_17D

4.12E-06

4.19E-06

0.535351

1427615_at

Itga4

integrin_alpha_4

8.56E-04

5.59E-04

0.422541

1428056_at

Klra7

Killer_cell_lectin-like_receptor,_subfamily_A,_member_7

5.32E-04

6.98E-04

0.561618

1430132_at

Krt28

keratin_28

9.00E-04

2.22E-04

0.244397

1441873_at

Prlpe

prolactin-like_protein_E

3.25E-05

3.65E-05

0.605783

1428111_at

Slc38a4

solute_carrier_family_38,_member_4

1.51E-04

3.85E-04

0.6009

1429901_at

Tcba1

T-cell_lymphoma_breakpoint_associated_target_1

2.14E-04

1.20E-04

0.438909

C. Probe sets of PPLR > 0.999 or < 0.001 in S v N only

   

1419549_at

Arg1

arginase_1,_liver

0.23588

5.87E-04

0.003669

1425532_a_at

Bin1

bridging_integrator_1

0.985409

0.999463

0.941873

1449637_at

Cdh4

cadherin_4

0.001517

4.54E-04

0.293429

1422542_at

Gpr34

G_protein-coupled_receptor_34

0.0022

5.97E-04

0.51351

1427850_x_at

Igh-VJ558

immunoglobulin_heavy_chain_(J558_family)

0.819554

0.999188

0.995084

1422250_at

Map3k2

mitogen_activated_protein_kinase_kinase_kinase_2

0.790984

0.999799

0.998933

1417051_at

Pcdh8

protocadherin_8

0.704933

0.999094

0.997809

1416576_at

Socs3

suppressor_of_cytokine_signaling_3

0.927402

0.999427

0.989809

D. Probe sets of PPLR > 0.999 or < 0.001 in E v N and S v E

   

1440832_at

Ang4

angiogenin,_ribonuclease_A_family,_member_4

0.999347

0.119804

3.84E-06

1419684_at

Ccl8

chemokine_(C-C_motif)_ligand_8

0.999999

0.98578

4.66E-04

1447620_at

Cno

cappuccino

0.999021

0.473507

4.52E-04

1426731_at

Des

desmin

0.999964

0.270284

1.93E-06

1435290_x_at

H2-Aa

histocompatibility_2,_class_II_antigen_A,_alpha

1

0.928626

4.61E-08

1419043_a_at

Iigp1

interferon_inducible_GTPase_1

0.999969

0.644236

2.52E-04

1449490_at

Mbd4

methyl-CpG_binding_domain_protein_4

0.999147

0.449218

1.50E-04

1423505_at

Tagln

transgelin

0.999831

0.031314

1.35E-08

E. Probe sets of PPLR > 0.999 or < 0.001 in E v N and S v E and S v N

   

1455106_a_at

Ckb

creatine_kinase,_brain

0.999225

6.03E-04

2.32E-10

1418240_at

Gbp2

guanylate_nucleotide_binding_protein_2

1

0.999995

1.49E-07

1449009_at

Tgtp

T-cell_specific_GTPase

1

0.999989

4.83E-11

F. Probe sets of PPLR > 0.999 or < 0.001 in S v N and S v E

   

1425103_at

Ace2

angiotensin_I_converting_enzyme_(peptidyl-

dipeptidase_A)_2

0.275223

0.999142

0.999784

1416330_at

Cd81

CD_81_antigen

0.599285

4.84E-06

1.05E-06

1457644_s_at

Cxcl1

chemokine_(C-X-C_motif)_ligand_1

0.378865

0.999467

0.999866

1416685_s_at

Fbl

fibrillarin

0.873786

1.01E-06

1.11E-09

1416221_at

Fstl1

follistatin-like_1

0.716963

1.49E-04

1.05E-05

1415988_at

Hdlbp

high_density_lipoprotein_(HDL)_binding_protein

0.531698

5.56E-04

4.14E-04

1447692_x_at

Map3k7ip1

mitogen-activated_protein_kinase_kinase_kinase

_7_interacting_protein_1

0.321227

0.999609

0.999863

1450641_at

Vim

vimentin

0.727751

5.04E-05

2.09E-06

G. Probe sets of PPLR > 0.999 or < 0.001 in S v E only

   

1443341_at

Anxa4

Annexin_A4

0.994522

0.054991

3.27E-06

1460218_at

Cd52

CD52_antigen

0.979891

0.167083

9.70E-04

1418457_at

Cxcl14

chemokine_(C-X-C_motif)_ligand_14

0.931634

0.008835

1.23E-04

1422412_x_at

Ear3

eosinophil-associated,_ribonuclease_A_family,_

member_3

0.947348

0.011739

3.24E-04

1423407_a_at

Fbln2

fibulin_2

0.919939

0.025244

2.66E-04

1457346_at

Foxp1

Forkhead_box_P1

0.998173

0.287033

3.68E-04

1427351_s_at

Igh-6

immunoglobulin_heavy_chain_6_(heavy_chain_of_IgM)

0.974353

0.029092

6.25E-05

1454665_at

Irf2bp2_///_LOC672960

interferon_regulatory_factor_2_binding_protein_2_///_

similar_to_interferon_regulatory_factor_2_binding_

protein_2

0.660352

0.003366

8.80E-04

1415961_at

Itm2c

integral_membrane_protein_2C

0.699876

0.003609

4.85E-04

1451407_at

Jam4

junction_adhesion_molecule_4

0.130394

0.98967

0.999784

1449989_at

Mcpt2

mast_cell_protease_2

0.997228

0.27691

3.33E-04

1443037_at

Nptn

Neuroplastin

0.971795

0.087496

5.36E-04

1445827_at

Prkcbp1

Protein_kinase_C_binding_protein_1

0.952881

0.098262

9.82E-04

1456262_at

Rbm5

RNA_binding_motif_protein_5

0.995795

0.026747

1.31E-06

1417654_at

Sdc4

syndecan_4

0.78476

0.003683

2.83E-04

1447034_at

Tnpo1

Transportin_1

0.932695

0.022353

2.24E-04

  1. A = Probe sets of PPLR > 0.999 or < 0.001 in E isolate-infected gut tissue compared to naïve gut tissue only, B = Probe sets of PPLR > 0.999 or < 0.001 in E isolate-infected gut tissue compared to naïve gut tissue and S isolate-infected gut tissue compared to naïve gut tissue, C = of PPLR > 0.999 or < 0.001 in S isolate-infected gut tissue compared to naïve gut tissue only, D = Probe sets of PPLR > 0.999 or < 0.001 in E isolate-infected gut tissue compared to naïve gut tissue and S isolate-infected gut tissue compared to E isolate-infected gut tissue, E = Probe sets of PPLR > 0.999 or < 0.001 in E isolate-infected gut tissue compared to naïve gut tissue and S isolate-infected gut tissue compared to E isolate-infected gut tissue and S isolate-infected gut tissue compared to naïve gut tissue, F = Probe sets of PPLR > 0.999 or < 0.001 in S isolate-infected gut tissue compared to naïve gut tissue and S isolate-infected gut tissue compared to E isolate-infected gut tissue, G = Probe sets of PPLR > 0.999 or < 0.001 in S isolate-infected gut tissue compared to E isolate-infected gut tissue only.