Table 4 Accuracy by Species.
From: The effect of sequencing errors on metagenomic gene prediction
GeneMark | MetaGene | MGA | Orphelia | ESTScan | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Species | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 |
GC-content 30 - 39% | ||||||||||
B. aphidicola | 81.7 | 92.6 | 88.5 | 88.1 | 90.1 | 88.6 | 66.0 | 93.5 | 71.4 | 98.3 |
A. laidlawii | 86.2 | 94.6 | 90.4 | 89.9 | 91.9 | 91.3 | 75.3 | 96.2 | 81.4 | 97.3 |
P. marinus | 81.8 | 91.3 | 84.0 | 87.1 | 84.2 | 87.9 | 61.9 | 92.5 | 69.3 | 97.3 |
D. thermophilum | 85.1 | 94.2 | 84.7 | 90.5 | 86.6 | 91.2 | 71.8 | 94.6 | 70.5 | 98.5 |
N. maritimus | 85.7 | 90.4 | 86.2 | 86.7 | 87.7 | 87.7 | 68.1 | 92.4 | 76.9 | 96.1 |
W. endosymbiont | 80.1 | 81.0 | 83.6 | 84.0 | 84.7 | 85.6 | 65.2 | 90.9 | 67.6 | 94.5 |
Hydrogenobaculum sp. | 83.9 | 93.9 | 84.3 | 89.9 | 85.5 | 90.8 | 67.2 | 93.1 | 73.0 | 98.1 |
GC-content 40 - 49% | ||||||||||
D. kamchatkensis | 73.3 | 94.3 | 77.1 | 89.5 | 79.5 | 90.4 | 61.4 | 93.1 | 35.0 | 94.4 |
E. sibiricum | 78.9 | 90.0 | 81.7 | 88.2 | 81.8 | 89.4 | 78.3 | 93.9 | 74.4 | 95.1 |
GC-content 50 - 59% | ||||||||||
H. aurantiacus | 70.2 | 80.1 | 80.2 | 84.9 | 78.6 | 86.1 | 74.0 | 92.7 | 76.4 | 95.5 |
C. tepidum | 74.0 | 76.6 | 78.6 | 81.0 | 79.0 | 83.0 | 72.7 | 89.9 | 72.7 | 93.7 |
GC-content 60 - 69% | ||||||||||
C. jeikeium | 77.2 | 83.7 | 84.2 | 83.3 | 86.6 | 88.2 | 79.7 | 93.2 | 76.1 | 96.3 |
N. pharaonis | 77.0 | 83.5 | 83.3 | 81.6 | 83.9 | 84.8 | 72.8 | 91.3 | 75.3 | 94.4 |
B. pseudomallei | 77.7 | 80.5 | 85.2 | 77.6 | 85.9 | 83.3 | 77.0 | 87.8 | 84.5 | 97.7 |