Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data

Table 1 Settings within the cultivation parameters

Aeration type	C-source	N-source	S-source	Limiting element
Aerobic	Acetate (Ace)	Ammonium chloride (A.cl.)	Methionine (Met)	Carbon
Anaerobic	Ethanol (Eth)	Ammonium sulfate (A.s.)	Sulfate	Iron (Iro)
	Galactose (Gal)	Asparagine (Asp)		Nitrogen
	Glucose	Leucine (Leu)		Phosphorus (Pho/Phos)
	Maltose (Mal)	Methionine (Met/Meth)		Sulfur (Sul/Sulf)
		Phenylalanine (Phen)		Zinc (Zin)
		Proline (Pro)
Growth rate	Temperature (C)	pH	Extra compound	Protocol
0.03	12	3.5	Acetate (Ace)	B
0.05	30	5	Benzoate (Benz)	A
0.1		6.5	CO₂
0.2			Ethanol 18.72 mM (Eth)
			Ethanol 9.38 mM (Eth)
			Formate (For)
			Propionate (Pro)
			Sorbate (Sor)
			Tween 80 (Twe)
			none

This table presents the different settings within each of the ten cultivation parameters. Each of the 55 conditions in the chemostat compendium is characterized by a combination of settings of the ten cultivation parameters. The colored matrix in Figure 1 is a schematic representation of the settings of the cultivation parameters for each condition. Abbreviations of cultivation parameter settings used in the schematic representation are stated between parentheses in this table.

ISSN: 1471-2164