Table 2 Characterization of B. rapa BAC clones containing discontinuities in collinearity with the A. thaliana genome

KBrH106N09

CU915572

4g03430-4g03630| 4g05460-4g05430| 3g26280-3g26570

A9^b

3

KBrB089J13

CU695271

4g38560-4g38350| 4g14145-4g14350| 1g30480-1g30400

A8^a

7

KBrH110M01

AC237306

2g22840-2g20920| 2g41990-2g42005| 5g49760-5g49900

A3^b

2

KBrH013F08

CU695290

3g52930-3g52770| 1g02080-1g01980| 5g42100-5g42020

4

KBrB028F11

AC237302

2g20440-2g20900| 3g24620-3g25290| 1g62200-1g63390

A9^b

2

KBrB026E16

CU914552

4g14550-4g14420| 1g30550-1g30810

A8^b

4

KBrH109L07

CU695323

3g49370-3g49660| 5g61770-5g61780

A6^a

5

KBrH010M06

AC237305

3g49870-3g49670| 5g61760-5g61580

A3^b

3

KBrH004M24

AC232396

2g01210-2g01060| 5g47810-5g47540

A6^b

4

KBrB026A12

AC237301

5g47680-5g47760| 2g01110-2g01410

A9^b

5

KBrH131P10

FP245487

3g24350-3g24495| 1g62120-1g61890

A1^b

4

KBrH001J23

CU695282

3g49700-3g49730| 1g21900-1g21650

A6^a

5

KBrH034P16

CU740088

3g52490-3g52500| 4g15230-4g15410

A3^a

8

KBrH071G03

FP236364

5g42920-5g42470| 4g39770-4g39480

7

KBrH024O16

CU695293

5g49960-5g49810| 1g64970-1g65200

5

KBrB055E21

AC232500

3g01590-3g02000| 4g00050-4g00370

A3^b

14

KBrH004I22

AC237303

2g04740-2g04050| 3g25520-3g25550

A3^b

5

KBrH006I08

AC237304

3g63240-3g63460| 2g26540-2g26260

A9^b

3

KBrH026A01

CU928183

2g25290-2g26170| 4g00040-4g00080| 2g24690-2g24450

2

KBrH066L21

CU695309

5g28060-5g28150| 5g30510-5g28490| 5g49570-5g49360

A9^a

12

KBrB129C20

CU695281

5g22750-5g22980| 5g60800-5g60460

A3^a

18

KBrH055O17

FP565592

5g23100-5g23080| 5g60830-5g61380

10

KBrB011D06

AC232452

2g05540-2g05760| 2g07690-2g05840| 2g11890-2g12480

A3^c

5

KBrB022J01

CU695257

4g35450-4g35335| 4g23620-4g24120| 4g36130-4g36140

A8^b

3

KBrH108B16

CU984565

5g59700-5g59650| 5g60110-5g59320| 5g59030-5g59130

A3^a

8

KBrH064I20

CU695308

4g36760-4g36870| 4g37240-4g36880| 4g37260-4g37410

A8^a

7

KBrH001C16

CU928050

4g37410-4g37250| 4g36880-4g36910

A1^a

9

KBrH027B04

CU915252

4g37170-4g37240| 4g36870-4g36660

A1^b

5

KBrH073M17

CU914555

3g08930-3g08600| 3g10330-3g10650

A3^a

10

KBrH073M07

CU695313

3g09760-3g10180| 3g08530-3g07980

A3^a

11

KBrH088K13

CU984562

4g00170-4g00770| 4g01370-4g01270

A3^a

4

KBrH108F05

CU695322

4g01040-4g00800| 4g01400-4g01450

A3^a

2

KBrB034C23

AC229604

5g26850-5g27020| 5g27930-5g27520

A9^a

22

KBrH106B05

CU915253

5g28080-5g27950| 5g27110-5g27380

A6^a

3

KBrH089D10

FP085567

1g08450-1g07860| 1g07705-1g07720

A8^b

1

KBrH056E23

CU695304

1g13380-1g13400| 1g11860-1g11490

A6^a

3

KBrB026M01

CU695258

1g23820-1g24180| 1g27210-1g26970

A8^b

6

KBrB122B06

FP236659

1g49630-1g49590| 1g49880-1g50220

2

KBrB100G10

CU695273

1g50380-1g50980| 1g51420-1g51380

8

KBrB092C03

CU984555

1g65580-1g64750| 1g67220-1g67330

A7^a

7

KBrH061M05

CU695307

2g32870-2g32830| 2g33120-2g33710

A3^a

4

KBrH127P20

CU695332

2g46300-2g46140| 2g40430-2g40700

A5^a

8

KBrH083O14

FP325102

2g47250-2g47950| 2g29950-2g29320

8

KBrB037J21

CU984548

3g24040-3g23940| 3g24300-3g24310

A1^a

2

KBrB008F10

CU695255

4g17460-4g17480| 4g28380-4g28070

A1^b

2

KBrB045C11

FP236657

4g20200-4g20890| 4g21710-4g21680

1

KBrB090F01

CU915574

4g39980-4g40100| 4g38060-4g37870

A1^a

9

KBrB107K13

CU695275

5g02800-5g02030| 5g01040-5g01075

A2^a

11

KBrB073M23

CU915573

5g02880-5g03370| 5g02580-5g02310

5

KBrH100O23

FP017268

4g03240-4g03610| 4g05460-4g04940

5