Figure 4
From: Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis
Phylogenetic relationships of streptococcal glycoside hydrolase family 1 proteins. Maximum-likelihood tree of streptococcal glycoside hydrolase family 1 proteins from: S. uberis, dark blue; S. pyogenes Manfredo, red; S. equi 4047, brown; S. zooepidemicus H70 grey; S. suis P1/7, pink; S. pneumoniae TIGR4, S. gordonii Challis, green; light blue; S. sanguinis SK36, yellow; S. mutans UA159, purple; S. algalactiae NEM316, orange; black. Sequences of Fasta searches 'top match' hits in UniProt (Table 1), outside the streptococcal genomes used above have been included, black: Q3Y0U6_ENTFC, Enterococcus faecium; A1JLK3_YERE8, Yersinia enterocolitica; A5A692_BACLD, Bacillus licheniformis; Q300V6_STRSU, Streptococcus suis; Q65D52_BACLD, Bacillus licheniformis; Q3XXU1_ENTFC, Enterococcus faecium; LACG_LACLA, Lactococcus lactis subsp. lactis; Q02YI9_LACLS, Lactococcus lactis subsp. cremoris; A6M0G4_CLOB8, Clostridium beijerinckii. The tree was constructed with the WAG model of amino acid substitution, assuming a gamma distribution of among-site substitution rates. The numbers at the tree branches are percentage bootstrap values indicating the confidence levels, values below 50 are not shown.