Skip to main content

Table 2 List of the important KEGG pathways more than 3 differentially expressed genes affiliated

From: Comparative transcripts profiling reveals new insight into molecular processes regulating lycopene accumulation in a sweet orange (Citrus sinensis) red-flesh mutant

KEGGapathway

Genes b

Gene ID

Best E-value

Apoptosis

5

CN183092, TC22936, TC25357, TC3430, TC81

4.00E-025

Biosynthesis of steroids

5

EY708186, EY737600, TC13179, TC14003, TC8568

1.00E-145

Calcium signaling pathway

4

TC10446, TC2776, TC6871, TC41

1.00E-021

Carotenoid biosynthesis-General

4

TC14843, TC17929, TC5, TC5834

0

Cell cycle

4

TC410, TC15757, TC25101, TC5900

1.00E-030

Citrate cycle (TCA cycle)

3

EY670548, TC22243, TC623

1.00E-166

Cysteine metabolism

4

CF835920, DN620599, TC12093, TC5490

1.00E-073

Diterpenoid biosynthesis

4

TC14843, TC17929, TC22276, TC23691

8.00E-043

Fatty acid biosynthesis

7

CX074436, EY700768, CV713900, EY748567, TC10790, TC13490, TC9950

1.00E-133

Flavonoid biosynthesis

4

BQ622999, TC18809, TC23691, TC24546

1.00E-063

Folate biosynthesis

3

TC13190, TC25006, TC9636

1.00E-105

Fructose and mannose metabolism

3

TC3179, TC599, TC8180

1.00E-144

Glycerophospholipid metabolism

3

CX676461, TC13437, TC1366

3.00E-042

Glycolysis/Gluconeogenesis

5

TC10790, TC13490, TC5567, TC599, TC4947

1.00E-144

Limonene and pinene degradation

4

TC12405, TC14251, TC15293, TC20473

1.00E-125

MAPK signaling pathway

4

TC10975, TC11537, TC14581, TC23673

7.00E-075

Metabolism by cytochrome P450

3

TC16950, TC25526, TC25649

2.00E-052

Nicotinate and nicotinamide metabolism

4

DN620930, TC12023, TC19292, TC23834

2.00E-063

Oxidative phosphorylation

12

CX047553, DN621543, EY666061, TC10047, TC11705, TC16046, TC165, TC2473, TC2776, TC367, TC9593, TC9609

0

Photosynthesis

5

DY305711, EY675075, TC15280, TC17840, TC225

1.00E-124

Proteasome

3

TC5683, TC15808, TC4307

1.00E-134

Protein export

3

EY655396, EY667540, TC3601

3.00E-085

Pyruvate metabolism

8

928, CV713900, EY670548, TC13490, TC13985, TC2886, TC4947, TC623

1.00E-166

Ribosome

11

EY678532, EY755319, EY756332, TC13063, TC17838, TC18427, TC20162, TC21064, TC25973, TC7029, TC8912

8.00E-095

Starch and sucrose metabolism

4

TC12327, TC6279, TC7121, TC7710

0

Ubiquitin mediated proteolysis

12

EY692161, EY720797, TC11061, TC11537, TC11678, TC11708, TC11720, TC15530, TC18081, TC24614, TC458, TC8922

1.00E-116

  1. aKEGG = Kyoto Encyclopedia of Genes and Genomes.
  2. bThe differentially expressed genes are significant at 0.05 level between the mutant and wild type