Genome reannotation of Escherichia coli CFT073 with new insights into virulence

BMC Genomics

Table 2 List of newly added mobile genetic element-related genes

ID^a	Start site	Stop site	Strand	Comments^b
c0012r	131965	132090	Forward	Transposase for insertion sequence
c0024r	255849	256166	Forward	Transposase protein
c0027r	270919	270674	Reverse	Phage integrase family protein
c0039r	331709	331584	Reverse	Predicted integrase protein
c0042r	376998	377138	Forward	Homologue to Iso-IS1-insB protein
c0053r	627463	627155	Reverse	Putative prophase integrase protein, IntD
c0054r	627782	627483	Reverse	Putative integrase
c0100r	1234499	1235998	Forward	R6-like transposase protein
c0101r	1235995	1236750	Forward	Insertion sequence ATP-binding protein
c0175r	2349098	2349277	Forward	Putative transposase
c0215r	3452165	3451905	Reverse	Insertion sequence protein
c0250r	4284055	4283780	Reverse	IS element
c0251r	4291696	4292046	Forward	Transposase
c0252r	4293121	4293074	Reverse	Transposase IS3/IS911 family protein

^athe ID code follows the order of gene loci on chromosome in the reannotation;
^bthe comments on functions are conducted from CDD rps-blast results [16] and Swiss-Prot psi-search results [15].

ISSN: 1471-2164