Skip to main content

Table 2 List of newly added mobile genetic element-related genes

From: Genome reannotation of Escherichia coli CFT073 with new insights into virulence

IDa Start site Stop site Strand Commentsb
c0012r 131965 132090 Forward Transposase for insertion sequence
c0024r 255849 256166 Forward Transposase protein
c0027r 270919 270674 Reverse Phage integrase family protein
c0039r 331709 331584 Reverse Predicted integrase protein
c0042r 376998 377138 Forward Homologue to Iso-IS1-insB protein
c0053r 627463 627155 Reverse Putative prophase integrase protein, IntD
c0054r 627782 627483 Reverse Putative integrase
c0100r 1234499 1235998 Forward R6-like transposase protein
c0101r 1235995 1236750 Forward Insertion sequence ATP-binding protein
c0175r 2349098 2349277 Forward Putative transposase
c0215r 3452165 3451905 Reverse Insertion sequence protein
c0250r 4284055 4283780 Reverse IS element
c0251r 4291696 4292046 Forward Transposase
c0252r 4293121 4293074 Reverse Transposase IS3/IS911 family protein
  1. athe ID code follows the order of gene loci on chromosome in the reannotation;
  2. bthe comments on functions are conducted from CDD rps-blast results [16] and Swiss-Prot psi-search results [15].