SNP Genotyping data analysis. The Fluidigm SNP Genotyping Analysis software automatically analyzes the end-point image of a genotyping chip run and generates genotyping calls for each sample. (a). Raw image from a 48.48CS chip run in both FAM and VIC fluorescent channels. (b). The software generated call map view of the genotyping calls for each of the 2304 reaction chambers. (c) Software generated scatter plot for 48 samples in one SNP assay with genotype calls automatically. Four different color coded, 3 genotypes plus negative controls (NTC, black dots) are observed (d) Genotyping scatter plot of samples from 22 chip runs.