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Table 2 Completion Rates comparing the Fluidigm platform with standard TaqMan chemistry (CGF)

From: High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays

Assay Fluidigm Completion Rate 95% CI lower 95% CI upper N CGF Completion Rate 95% CI lower 95% CI upper M Completion rate based on
A-050522 97.89 97.00 98.78 995 96.95 95.88 98.02 995 All Samples (N = M = 995)
A-050546 98.89 98.24 99.54 995 98.85 98.19 99.51 995 All Samples (N = M = 995)
A-051020 98.89 98.24 99.54 995 97.66 96.72 98.60 995 All Samples (N = M = 995)
A-048530 98.69 97.99 99.40 995 98.96 98.33 99.59 995 All Samples (N = M = 995)
A-051016 99.40 98.92 99.88 995 98.78 98.10 99.46 995 All Samples (N = M = 995)
A-028526 99.70 99.36 100.00 995 98.66 97.91 99.41 905 N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)
A-041985 98.29 97.49 99.10 995 98.22 97.36 99.08 905 N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)
A-051013 99.50 99.06 99.94 995 98.59 97.86 99.32 995 All Samples (N = M = 995)
A-051017 99.40 98.92 99.88 995 99.41 98.93 99.89 995 All Samples (N = M = 995)
A-051018 99.50 99.06 99.94 995 99.32 98.81 99.83 995 All Samples (N = M = 995)
A-029470 99.80 99.52 100.00 995 98.66 97.91 99.41 905 N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)
A-050521 99.70 99.36 100.00 995 97.55 96.59 98.51 995 All Samples (N = M = 995)
A-048529 99.80 99.52 100.00 995 99.25 98.71 99.79 995 All Samples (N = M = 995)
A-041990 99.90 99.70 100.00 995 99 98.35 99.65 905 N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)
001_2058 99.50 99.06 99.94 995 99 98.35 99.65 905 N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)
A-050301 99.50 99.06 99.94 995 99.28 98.75 99.81 995 All Samples (N = M = 995)
A-051015 99.80 99.52 100.00 995 99.22 98.67 99.77 995 All Samples (N = M = 995)
A-051019 99.50 99.06 99.94 995 98.82 98.15 99.49 995 All Samples (N = M = 995)
A-042514 99.30 98.78 99.82 995 99.65 99.28 100.00 995 All Samples (N = M = 995)
A-051014 99.90 99.70 100.00 995 99.61 99.22 100.00 995 All Samples (N = M = 995)
A-035643 99.60 98.29 100.00 90 N.D. N.D N.D. N.D. N = 90 Fluidigm HapMap
A-036266 99.70 98.57 100.00 90 N.D. N.D. N.D. N.D. N = 90 Fluidigm HapMap
A-048531 100.00 100.00 100.00 90 94.59 89.92 99.26 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050302 100.00 100.00 100.00 90 87.39 80.53 94.25 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050526 99.90 99.24 100.00 90 89.19 82.77 95.61 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050527 100.00 100.00 100.00 90 89.19 82.77 95.61 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050528 100.00 100.00 100.00 90 90.09 83.92 96.26 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050532 100.00 100.00 100.00 90 89.19 82.77 95.61 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050534 100.00 100.00 100.00 90 89.19 82.77 95.61 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050537 100.00 100.00 100.00 90 90.09 83.92 96.26 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050540 100.00 100.00 100.00 90 90.09 83.92 96.26 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-050541 100.00 100.00 100.00 90 89.19 82.77 95.61 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051351 100.00 100.00 100.00 90 99.1 97.15 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051352 100.00 100.00 100.00 90 98.2 95.45 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051353 100.00 100.00 100.00 90 98.2 95.45 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051354 99.80 98.87 100.00 90 N.D. N.D. N.D. N.D. N = 90 Fluidigm HapMap
A-051355 100.00 100.00 100.00 90 99.1 97.15 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051356 100.00 100.00 100.00 90 99.1 97.15 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051357 100.00 100.00 100.00 90 99.1 97.15 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051358 100.00 100.00 100.00 90 N.D. N.D. N.D. N.D. N = 90 Fluidigm HapMap
A-051359 100.00 100.00 100.00 90 98.2 95.45 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051360 99.90 99.24 100.00 90 97.3 93.95 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051361 100.00 100.00 100.00 90 98.2 95.45 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051362 99.90 99.24 100.00 90 99.1 97.15 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051363 100.00 100.00 100.00 90 98.2 95.45 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051364 100.00 100.00 100.00 90 98.2 95.45 100.00 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap
A-051365 100.00 100.00 100.00 90 94.59 89.92 99.26 90 N = 90 Fluidigm HapMap and M = 90 CGF HapMap