Skip to main content

Advertisement

Table 3 Results of placing the reporters that align with the RefSeq RNA transcripts of a single gene on the chromosome

From: Evaluating annotations of an Agilent expression chip suggests that many features cannot be interpreted

Eligible Fully Valid No Placement Multiple Genes Overlapping Genes Wrong Gene
27364 25505 177 1429 238 15
  1. The first column is the total number of eligible reporters, which is the same data as the fourth column of Table 2. The second column shows the number of reporters that have a valid placement in a unique gene; this is the same data as the first column of Table 1. The third column shows the number of reporters that did not have a high-quality placement. The fourth column shows the number of reporters that have multiple placements and are placed in the location of more than one gene. The fifth column shows the number of reporters with a single placement, but a placement within overlapping genes. The sixth column shows the number of reporters placed in a single gene, but not the same gene as found by alignment to RNA. The sum of the four rightmost columns gives the 2565 RNA valid reporters in Table 1.