Table 2 The 25 most abundant InterPro domains for G. max and P. sojae probesets that cross-hybridized with H. glycines probes.
From: Sequence mining and transcript profiling to explore cyst nematode parasitism
G. max | Â | Â | P. sojae | Â | Â |
|---|---|---|---|---|---|
InterPro domain | Â | Number of probesets | InterPro domain | Â | Number of probesets |
Ubiquitin | IPR000626 | 16 | Sugar transporter superfamily | IPR005829 | 3 |
Extensin-like protein | IPR003883 | 9 | EGF-like region | IPR013032 | 3 |
Glutamine amidotransferase | IPR000583 | 9 | Peptidase S8 and S53 | IPR000209 | 2 |
ATP-sulfurylase | IPR002650 | 8 | HMG-I and HMG-Y, DNA-binding | IPR000637 | 2 |
Histone-fold | IPR009072 | 6 | TonB box, N-terminal | IPR010916 | 2 |
Zinc finger, C2H2-type | IPR007087 | 6 | Penicillin-binding protein | IPR012338 | 2 |
Major intrinsic protein | IPR000425 | 5 | Rhodopsin-like GPCR superfamily | IPR000276 | 2 |
EGF-like region | IPR013032 | 5 | DEAD/DEAH box helicase | IPR001410 | 2 |
DNA-binding WRKY | IPR003657 | 4 | Prefoldin | IPR009053 | 2 |
Cytochrome c oxidase | IPR000883 | 4 | Helix-turn-helix, Fis-type | IPR002197 | 2 |
Cupredoxin | IPR008972 | 4 | Zinc finger, C2H2-type | IPR007087 | 2 |
Bet v I allergen | IPR000916 | 3 | Ctr copper transporter | IPR007274 | 1 |
Chlorophyll A-B binding protein | IPR001344 | 3 | Glycoside hydrolase | IPR001764 | 1 |
Orn/DAP/Arg decarboxylase 2 | IPR000183 | 3 | Zinc finger, RING-type | IPR001841 | 1 |
No apical meristem (NAM) protein | IPR003441 | 3 | Protein prenyltransferase | IPR002088 | 1 |
IQ calmodulin-binding region | IPR000048 | 3 | Whey acidic protein | IPR008197 | 1 |
Zinc finger, RING-type | IPR001841 | 3 | Histone-fold | IPR009072 | 1 |
BURP | IPR004873 | 3 | Ribosomal protein L10 | IPR001790 | 1 |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 | IPR004038 | 3 | Major facilitator superfamily MFS_1 | IPR011701 | 1 |
UspA | IPR006016 | 3 | Phosphotransferase KptA/Tpt1 | IPR002745 | 1 |
Ribosomal protein L32e | IPR001515 | 3 | Regulator of chromosome condensation | IPR000408 | 1 |
Dehydrin | IPR000167 | 3 | Inositol 1, 3, 4-trisphosphate 56-kinase | IPR008656 | 1 |
Thioredoxin-like fold | IPR012336 | 3 | Serine carboxypeptidase | IPR001563 | 1 |
Thiamine pyrophosphate enzyme | IPR011766 | 3 | Na+ solute symporter | IPR001734 | 1 |
DNA photolyase | IPR005101 | 2 | Fructose-bisphosphate aldolase | IPR000741 | 1 |