Figure 3

Gene expression module regulated by CR. The figure shows a 40-gene co-expression module that is regulated by CR across multiple tissue types. Symbols shown within the grid reflect results of differential expression analyses for individual genes and tissues, given a comparison-wise type I error rate of 0.05 (i.e., no p-value adjustment for multiple testing of hypotheses). These symbols have the same interpretation as those shown in Figure 2. The columns of the grid, corresponding to individual tissue types, have been ordered from those for which module genes are most strongly up regulated by CR, to those for which module genes are most strongly down regulated by CR. The dendrogram (left) reflects the co-expression patterns among the 40 genes belonging to this module, which are based upon the expression of genes across a set of 3,700 Affymetrix 430 2.0 oligonucleotide arrays (see Methods). The dendrogram was generated by average linkage hierarchical cluster analysis, with distance between genes based upon the absolute value of Pearson's correlation coefficient (i.e., distance = 1 - |r|). Other CR-regulated co-expression modules were identified in the analysis, and further detail on the most significant of these is provided in Additional File 6.