Table 3 Distribution of genes with hits from multiple BAC end sequences, with details provided for genes with 10 or more hits from BAC end sequences

1

Novel protein similar to DNA polymerases

31

28

Repetitive elements related to retroelements

1

Methionine aminopeptidase 1

22

2

Repetitive elements or multigene family

1

NOD3 protein-like

18

63

Common domains shared by many related proteins

1

Similar to tudor domain containing 7, hypothetical protein LOC393661

17

89

Repetitive elements or repetitive genes

1

Similar to porf2

16

81

Repetitive elements or multigene family

1

Similar to general transcription factor II-I repeat domain-containing protein 2A

16

82

Repetitive elements or multigene family

1

Similar to novel G protein-coupled receptor

13

92

Repetitive elements or multigene family

1

Similar to serine/threonine-protein kinase pim-3;

11

85

Repetitive elements or multigene family

1

Similar to novel protein from Danio rerio;

11

85

Repetitive elements or multigene family

1

Similar to Dynein heavy chain 6

11

20

Repetitive elements or multigene family

1

ORF2 [Mus musculus domesticus]

10

91

Repetitive elements or multigene family

1

PREDICTED: tubulin, alpha, ubiquitous isoform 8 [Macaca mulatta]

10

16

Repetitive elements or multigene family

1

PREDICTED: similar to vacuolar protein sorting 52 [Danio rerio]

10

69

Repetitive elements or multigene family

1

GF20795 [Drosophila ananassae]

10

4

Repetitive elements or multigene family

14

Subtotal

68

5-9

Repetitive elements or multigene family

71

4

Repetitive elements or multigene family

139

Subtotal

230

3

Potentially duplicated gene candidates

641

2

Potentially duplicated gene candidates

1024

Total