Skip to main content

Table 3 Distribution of genes with hits from multiple BAC end sequences, with details provided for genes with 10 or more hits from BAC end sequences

From: Comparative analysis of catfish BAC end sequences with the zebrafish genome

No. of Genes Putative Identities No of BES hits Presence in Zebrafish genome Potential explanation
1 Novel protein similar to DNA polymerases 31 28 Repetitive elements related to retroelements
1 Methionine aminopeptidase 1 22 2 Repetitive elements or multigene family
1 NOD3 protein-like 18 63 Common domains shared by many related proteins
1 Similar to tudor domain containing 7, hypothetical protein LOC393661 17 89 Repetitive elements or repetitive genes
1 Similar to porf2 16 81 Repetitive elements or multigene family
1 Similar to general transcription factor II-I repeat domain-containing protein 2A 16 82 Repetitive elements or multigene family
1 Similar to novel G protein-coupled receptor 13 92 Repetitive elements or multigene family
1 Similar to serine/threonine-protein kinase pim-3; 11 85 Repetitive elements or multigene family
1 Similar to novel protein from Danio rerio; 11 85 Repetitive elements or multigene family
1 Similar to Dynein heavy chain 6 11 20 Repetitive elements or multigene family
1 ORF2 [Mus musculus domesticus] 10 91 Repetitive elements or multigene family
1 PREDICTED: tubulin, alpha, ubiquitous isoform 8 [Macaca mulatta] 10 16 Repetitive elements or multigene family
1 PREDICTED: similar to vacuolar protein sorting 52 [Danio rerio] 10 69 Repetitive elements or multigene family
1 GF20795 [Drosophila ananassae] 10 4 Repetitive elements or multigene family
14   Subtotal   
68   5-9   Repetitive elements or multigene family
71   4   Repetitive elements or multigene family
139   Subtotal   
230   3   Potentially duplicated gene candidates
641   2   Potentially duplicated gene candidates
1024   Total