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Table 1 TR properties in 14 representative proteomes

From: Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty?

 

Number ORFs

Number unique TRs

Number

TR-proteins

Avg. len. TR-protein

% fragmentsa

Maximal copy number (n)

Maximal

TR length

C. intestinalis***

1,496

51

67

480

32.3

30

44

L. major***

8,317

158

237

631

1.5

1385

771

X. laevis***

15,772

329

565

429

17.9

55

84

T. castaneum*

9,766

334

357

528

29.5

96

189

A. mellifera*

9,257

348

417

510

42.5

55

105

G. gallus*

18,529

493

674

471

29.4

56

366

A. thaliana*

31,921

602

888

409

11.8

46

120

C. elegans*

38,096

655

1641

464

5.7

230

903

M. brevicollis***

9,269

690

1017

597

10.5

141

135

D. melanogaster*

19,789

723

1611

559

17.6

246

124

H. magnipapillata**

17,586

882

1016

422

N.A.

97

472

H. sapiens*

34,180

967

2008

481

26.8

238

1201

M. musculus*

46,892

1106

3007

478

23.3

131

515

N. vectensis***

24,906

3315

3875

335

46.8

119

341

  1. aThe fraction of fragments is based on the UniProtKB collection.
  2. * Complete proteomes as extracted from the Xstream resource; ** Data from NCBI based on Craig Venter Institute genome project. *** Data from UniProtKB