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Table 2 Reproducibility of expression of core FeHm stimulon genes

From: The iron/heme regulated genes of Haemophilus influenzae: comparative transcriptional profiling as a tool to define the species core modulon

  NTHi R2866 Hib 10810 Rd KW20
Locusa Arrayb QPCRc Arrayb QPCRc Arrayd QPCRc
HI0006m 8.36 12.99 7.58 18.00 not on 9.76
HI0007 7.49 11.02 6.00 9.31 3.40 7.29
HI0017 -8.25 -19.19 -3.03 -14.92 -1.87 -8.08
HI0020 -2.54 -4.81 -1.83 -6.04 -1.75 -2.29
HI0035 -2.46 -1.07 -1.74 -1.71 -1.55 -2.55
HI0075 -2.95 1.03 -2.54 -3.26 -4.03 -10.03
HI0092 -7.26 -2.14 -2.23 -1.51 -2.04 -5.51
HI0095 -12.56 -4.63 -3.93 -7.42 -10.21 -23.17
HI0097 -14.27 -38.00 -4.52 -67.60 -8.15 -39.73
HI0113 -4.72 -2.06 -2.28 -4.77 -2.36 -2.56
HI0157 2.18 3.29 1.52 3.71 1.55 3.64
HI0173 3.07 3.54 1.68 2.23 1.90 2.32
HI0185 5.86 38.95 4.01 41.06 8.04 30.77
HI0206 -2.25 -2.18 -2.09 -4.89 -1.60 -2.53
HI0230 2.91 5.42 2.51 3.10 2.31 2.67
HI0244 2.59 10.47 1.87 3.13 2.30 4.51
HI0251 -1.99 1.18 -1.69 -3.12 -2.75 -1.16
HI0252 -2.45 1.15 -1.87 -3.90 -3.02 -2.56
HI0257 -2.27 -5.52 -1.52 -8.86 -1.61 -2.32
HI0262 -24.69 -13.38 -4.03 -5.95 -10.30 -26.93
HI0263 -29.31 -38.82 -3.29 -8.69 -9.20 -25.57
HI0319 2.76 4.47 1.54 2.83 1.96 2.88
HI0324 2.04 4.58 1.80 2.00 1.63 2.34
HI0584 -1.84 -1.83 -1.59 -2.09 -1.69 -3.39
HI0591 -11.40 -11.89 -13.78 -7.63 -3.84 -4.78
HI0623 2.51 8.29 2.07 3.76 1.62 2.75
HI0669 -2.08 1.02 -1.72 -1.98 -1.67 -2.18
HI0689 -4.96 -3.71 -1.85 -2.94 -1.53 -2.93
HI0691 -5.71 -3.95 -3.40 -7.87 -1.61 -1.98
HI0809 -6.41 -2.41 -3.16 -3.58 -2.87 -5.29
HI0863 -2.00 -1.66 -1.88 -1.57 -1.51 -1.39
HI0864 1.89 7.42 1.91 4.39 1.71 3.97
HI0878 1.70 4.99 2.00 3.80 1.96 2.55
HI0980 4.67 6.68 2.56 5.56 2.06 7.82
HI0994 -9.56 -3.83 -8.16 -26.02 -12.40 -23.55
HI0997m -15.68 -18.62 -14.61 -11.49 not on -10.70
HI0999 1.66 5.65 1.62 2.75 1.68 3.99
HI1051 3.02 6.10 2.44 3.16 1.80 4.32
HI1069 8.33 5.87 2.53 6.96 2.13 3.89
HI1094 2.53 1.44 1.60 1.94 1.81 1.66
HI1174m -2.06 -1.93 -1.75 -3.22 not on -2.78
HI1210 -5.29 -3.18 -2.68 -6.57 -2.47 -4.41
HI1214 1.92 2.21 2.40 2.33 1.74 2.99
HI1228 -3.35 -2.91 -1.50 -2.55 -1.62 -1.73
HI1282 2.87 6.73 3.13 4.16 1.96 6.62
HI1349 -4.12 -7.53 -3.70 -25.61 -1.53 -5.48
HI1359 -3.28 -2.74 -3.10 -5.00 -1.73 -2.49
HI1384 3.21 9.31 2.01 5.38 2.60 4.76
HI1398 -5.25 -3.55 -2.98 -5.80 -2.32 -3.82
HI1427 -6.60 -1.42 -2.32 -1.90 -6.12 -11.91
HI1706 3.24 14.28 3.39 5.81 3.14 12.76
HI1733 3.23 7.99 2.89 3.27 1.81 2.71
  1. a The gene locus in Rd KW20
  2. b Fold change between the FeHm unsupplemented and supplemented sample from the microarray
  3. c Fold change between the FeHm unsupplemented and supplemented sample by Q-PCR of an independent experiment.
  4. d Fold change between the FeHm unsupplemented and supplemented sample by Q-PCR of the Rd KW20 previously published by Whitby et al. [25]
  5. not present on Rd array, but inclusion in the core verified by Q-PCR of array samples
  6. Values in plain italic text show a disagreement in regulatory status between the microarray and Q-PCR data.