Table 2 Study of Kozak sequences for correctly and mispredicted start codons.
POSITION | NUCLEOTIDE | correctly predicted AUG with CCC-like motif (1474) | mispredicted AUG (364) | corrected AUG and BLASTP validated (187) | corrected AUG but not BLASTP validated (177) | correctly predicted (117) and corrected (18) AUG with GGG-like motif |
|---|---|---|---|---|---|---|
A | ||||||
T | ||||||
G | ||||||
+4 | A | 37.65 | 21.15 | 41.71 | 36.16 | 48.15 |
T | 10.92 | 22.53 | 10.16 | 11.86 | 7.41 | |
G | 40.57 | 30.49 | 41.714 | 42.94 | 34.81 | |
C | 10.85 | 25.82 | 6.42 | 9.04 | 9.63 | |
+5 | A | 45.32 | 25.27 | 47.06 | 45.76 | 37.04 |
T | 19.54 | 28.57 | 14.44 | 15.82 | 27.41 | |
G | 19.74 | 18.68 | 20.32 | 19.77 | 22.96 | |
C | 15.4 | 27.47 | 18.18 | 18.64 | 12.59 | |
+6 | A | 26.87 | 24.73 | 28.88 | 27.12 | 32.59 |
T | 23.47 | 32.14 | 20.86 | 23.16 | 23.7 | |
G | 28.7 | 22.53 | 26.2 | 30.51 | 28.15 | |
C | 20.96 | 20.6 | 24.06 | 19.21 | 15.56 |