Table 4 Gene cluster statistics where "best" filtered model is inconsistent with proteome peptide data
From: Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
Cluster ID | DSM E-Value | DSM Protein | DSM Protein Description | UniRef E Value | UniRef Protein | UniRef Protein Description |
|---|---|---|---|---|---|---|
68_S6 | 2E-64 | An15g00690 | strong similarity to 14.8 kD subunit of NADH:ubiquinone reductase – Neurospora crassa | 2E-54 | Q1E404 | Hypothetical protein; n = 1; Coccidioides immitis RS|Rep: Hypothetical protein – Coccidioides immitis RS |
229_S11 | 5E-41 | An09g03480 | strong similarity to snRNA-associated sm-like protein Lsm2 – Saccharomyces cerevisiae | 8E-35 | Q1E7Q6 | Hypothetical protein; n = 1; Coccidioides immitis RS|Rep: Hypothetical protein – Coccidioides immitis RS |
626_S3 | 4E-71 | An08g03600 | similarity to hypothetical protein CAE47874.1/AfA24A6.130c – Aspergillus fumigatus | 3E-47 | Q0D146 | Predicted protein; n = 1; Aspergillus terreus NIH2624|Rep: Predicted protein – Aspergillus terreus NIH2624 |
25_S5 | 0 | An07g09990 | strong similarity to heat shock protein 70 hsp70 – Ajellomyces capsulatus [putative frameshift] | 0 | Q56G95 | Heat shock protein 70; n = 2; mitosporic Trichocomaceae|Rep: Heat shock protein 70 – Penicillium marneffei |
523_S5 | 1E-75 | An07g01640 | strong similarity to calmodulin 6 CaM6 – Arabidopsis thaliana | 7E-70 | Q4WGR4 | EF-hand protein; n = 2; Aspergillus|Rep: EF-hand protein – Aspergillus fumigatus (Sartorya fumigata) |
303_S2 | 1E-37 | An02g05240 | strong similarity to histone 4 from patent WO9919502-A1 – Homo sapiens | 8E-38 | UPI00005A5829 | PREDICTED: similar to germinal histone H4 gene; n = 1; Canis familiaris|Rep: PREDICTED: similar to germinal histone H4 gene – Canis familiaris |
117_S3 | 2E-131 | An06g00990 | strong similarity to soluble cytoplasmic fumarate reductase YEL047c – Saccharomyces cerevisiae | 2E-71 | Q0CC76 | Hypothetical protein; n = 1; Aspergillus terreus NIH2624|Rep: Hypothetical protein – Aspergillus terreus NIH2624 |
54_S17 | 9E-139 | An04g06870 | similarity to hypothetical protein CAD21072.1 – Neurospora crassa | 2E-121 | Q4WPR6 | Transcription factor RfeF, putative; n = 1; Aspergillus fumigatus|Rep: Transcription factor RfeF, putative – Aspergillus fumigatus (Sartorya fumigata) |
717_S2 | 0 | An02g11680 | strong similarity to translation initiation factor eIF-4A – Schizosaccharomyces pombe | 0 | Q5B948 | ATP-dependent RNA helicase eIF4A; n = 1; Emericella nidulans|Rep: ATP-dependent RNA helicase eIF4A – Emericella nidulans (Aspergillus nidulans) |
39_S9 | 5E-72 | An12g09130 | similarity to glucanase ZmGnsN3 from patent WO200073470-A2 – Zea mays | 7E-130 | Q4WCP3 | Hypothetical protein; n = 1; Aspergillus fumigatus|Rep: Hypothetical protein – Aspergillus fumigatus (Sartorya fumigata) |
373_S9 | No Match |  |  | 0 | Q2TZ90 | Ca2+binding actin-bundling protein; n = 2; Aspergillus|Rep: Ca2+binding actin-bundling protein – Aspergillus oryzae |
256_S9 | 3E-125 | An12g04870 | strong similarity to cytoplasmic ribosomal protein of the large subunit L10 – Saccharomyces cerevisiae | 1E-117 | Q2TZP5 | RIB40 genomic DNA, SC011; n = 2; Aspergillus|Rep: RIB40 genomic DNA, SC011 – Aspergillus oryzae |
238_S10 | 2E-124 | An18g04220 | strong similarity to mitochondrial ADP/ATP carrier anc1p – Schizosaccharomyces pombe | 4E-115 | Q4WJN2 | Mitochondrial ADP, ATP carrier protein (Ant), putative; n = 1; Aspergillus fumigatus|Rep: Mitochondrial ADP, ATP carrier protein (Ant), putative – Aspergillus fumigatus (Sartorya fumigata) |