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Table 3 Transcription and chromatin-related genes with extreme changes in nucleosome enrichment, highest in trophozoites.

From: Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes

Gene

Description

H4 Change

PFL0145c

high mobility group protein

1.34

PF10_0217

pre-mRNA splicing factor, putative

1.22

MAL7P1.78

Transcription factor IIA, alpha/beta subunit

1.03

PF11_0266

small nuclear ribonucleoprotein D1, putative

1.00

PF08_0074

DNA/RNA-binding protein Alba, putative

0.99

PFI1835c

Nifu-like protein, putative

0.98

PF14_0411

small nuclear ribonucleoprotein, putative

0.95

PF14_0242

arginine n-methyltransferase, putative

0.94

PF10_0227

HORMA domain protein, putative

0.93

PFF0565c

EF-hand domain hypothetical protein, conserved

0.87

PFF0760w

RNA and export factor binding protein, putative

0.87

PFC1050w

tudor domain conserved Plasmodium protein

0.86

PF07_0057

transcription elongation factor s-ii, putative

0.83

MAL8P1.72

high mobility group protein

0.82

PFD0685c

chromosome associated protein, putative

0.78

PF14_0533

transcription factor with AP2 domain(s)

0.75

PFL1705w

RNA binding protein, putative

0.74

PF10_0232

Chromodomain-helicase-DNA-binding protein 1

0.72

PFD0795w

Histone acetyltransferase, putative

0.69

PF13_0318

RNA-binding protein, putative

0.69

PFC0610c

zinc finger protein, putative

0.68

PFD0985w

transcription factor with AP2 domain(s)

0.66

MAL7P1.157a

RNA binding protein, putative

0.63

PFE0520c

topoisomerase I

0.63

PFC0130c

RNA binding protein, conserved

0.62

PF10_0214

RNA binding protein, putative

0.62

PFL1085w

transcription factor with AP2 domain(s)

0.46

  1. H4 change is the Δlog2 ratio (H4 ChIP/gDNA) over three time points.