Figure 4

Novel predicted miRNAs. A-B Hairpin structure for predicted paralogous miRNA with homology to Arabidopsis thaliana and Vitis vinifera miR828. The two loci are located on LG_XII and LG_XV respectively. C-D Hairpin structure for two paralogous novel predicted miRNAs. The two loci are located on LG_XII and scaffold_129 respectively. E Hairpin structure for a novel predicted miRNA located on LG_I. In each case the miRNA sequence is indicated in green and the miRNA* in purple. F T-Coffee alignment of the two hairpin sequences in A-B. G T-Coffee alignment of the two hairpin sequences in C-D. The highest quality alignments are shaded in red and lower quality alignments in yellow. A box shows the regions representing the miRNA (black) or miRNA* (grey).