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Table 2 gGCSI values of genomes with different sizes calculated with varying numbers of windows

From: Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index

 

chromosomes

 

plasmids

  

name

B.subtilis

M.genitalium

cp32

pT181

pWCFS102

acession

NC_000964

NC_000908

NC_000952

J01764

NC_006376

size (bp)

4,214,630

580,076

30,800

4,439

2,365

8

0.2093

0.1391

0.4758

0.2650

0.3949

16

0.2096

0.1388

0.4552

0.2674

0.4153

32

0.2139

0.1361

0.4399

0.2590

0.4501

64

0.2137

0.1341

0.4377

0.2762

0.4218

128

0.2142

0.1319

0.4349

0.3213

0.4305

256

0.2142

0.1290

0.4304

0.3432

n.a.

512

0.2143

0.1280

0.4267

n.a.

n.a.

1024

0.2141

0.1286

0.4299

n.a.

n.a.

2048

0.2141

0.1282

0.4327

n.a.

n.a.

4096

0.2141

0.1276

n.a.

n.a.

n.a.

8192

0.2144

0.1276

n.a.

n.a.

n.a.

16384

0.2147

0.1260

n.a.

n.a.

n.a.

32768

0.2145

0.1266

n.a.

n.a.

n.a.

mean ± SD

0.2135 ± 0.002

0.1309 ± 0.005

0.4403 ± 0.016

0.2887 ± 0.035

0.4225 ± 0.020

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BMC Genomics

ISSN: 1471-2164

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