Table 1 Summary of 18 box C/D snoRNA genes in P. falciparum.
From: Analysis of small nucleolar RNAs reveals unique genetic features in malaria parasites
snoRNA | Chr | Methylation Site | Start | End | Location | Homology to yeast |
|---|---|---|---|---|---|---|
PFS1 | 3 | 18S Tm1370, 28S Gm1058 Gm3308 | 398237 | 398159 | Non coding, intergenic region | SSU Um1269 |
PFS2 | 8 | 18S A1129 28S Am3307 | 1162400 | 1162306 | Intron of PF08_0019 | LSU Am2946 |
PFS3 | 11 | 18S Cm1936, 28S Cm2490 | 378872 | 378789 | Non coding, intergenic region | SSU Cm 1639 |
PFS4 | 11 | 18S Am28 | 392950 | 392870 | Non-coding, intergenic region | SSU Am28 |
PFS5 | 11 | 28S Gm2960 | 389451 | 389379 | Intron of PF11_0105 | LSU Gm2619 |
PFS6 | 11 | 28S Am1264 | 388122 | 388057 | Intron of PF11_0105 | LSU Am1133 |
PFS7 | 11 | 28S Cm3176 | 388761 | 388683 | Intron of PF11_0105 | LSU Gm2815 |
PFS8 | 14 | 18S Gm1798, 28S Gm926 | 981730 | 981811 | Downstream of RPL7a (PF14_0231) | LSU Gm805 |
PFS9 | 14 | 28S Cm3240 | 979909 | 979977 | 3' UTR of RPL7a (PF14_0231) | LSU Cm4426 (Human) |
PFS10 | 14 | 18S Gm1674 | 974214 | 974149 | Intron of PF14_0230 | SSU Gm1428 |
PFS11 | 14 | 18S Am442 | 973365 | 973290 | Downstream of RPL5 Family (PF14_0230) | SSU Am 436 |
PFS12 | 14 | 18S Am1043 | 972999 | 972920 | Downstream of RPL5 Family (PF14_0230) | SSU Am974 |
PFS13 | 14 | 28S Am728 | 982297 | 982367 | Downstream of RPL7a (PF14_0231) | LSU Am649 |
PFS14 | 14 | 28S Am2551 | 875464 | 875318 | Downstream of RPS25 (PF14_0205) | LSU Am2256 |
PFS15 | 14 | 28S Cm2632 | 92872 | 92794 | Intron of PF14_0027 | LSU Cm2337 |
PFS16 | 14 | 28S Cm2632 | 93091 | 93013 | Intron of PF14_0027 | LSU Cm2337 |
PFS17 | 13 | 28S Cm3320 | 1637301 | 1637376 | Intron of MAL13P1.209 60S ribosomal subunit protein L18, putative | LSU Cm2959 |
PFS18 | 13 | 28S Cm1589 | 1295143 | 1295218 | Intron of PF13_0165 | LSU Cm1437 |