| Â | musculus | spretus |
|---|
GC% | 42.0% | 40.6% |
Repeats | 60.6% | 59.9% |
LINE | 39.5% | 39.3% |
LINE < 9.5
|
62.8%
|
61.8%
|
LINE < 2.0
|
1.9%
|
0.0%
|
SINE | 2.3% | 2.3% |
LTR | 16.9% | 16.3% |
Other | 1.9% | 2.0% |
- The percent GC base composition (GC%), total repeat content (Repeats), LINE repeat content (LINEs), SINE repeat content (SINEs), LTR repeat content (LTRs), and other repeat types (Other) are shown for the ~721-kb musculus and ~717-kb spretus sequences encompassing the V1Ra/V1Rb gene cluster. The fraction of the total LINE repeat content annotated by RepeatMasker with <9.5% substitution (mouse lineage-specific with respect to rat) and <2.0% substitution (musculus/spretus lineage-specific) is bolded.
