Table 2 Distribution of Ni/Co transporters in bacteria
From: Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization
Phylum | Total organisms | CbiMNQO /NikMNQO /NikKMLQO | NikABCDE | NiCoT | UreH | HupE/UreJ | Other predicted Co transporters** | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | N* | C | U | N | C | U | N | C | U | N | C | U | N | C | U | Â |
Firmicutes/Lactobacillales | 25 | 1 | 2 | 2 | 2 | - | - | - | - | 3 | - | - | - | - | - | - | - |
Firmicutes/Mollicutes | 17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Firmicutes/Bacillales | 25 | - | 6 | - | 6 | - | - | 1 | - | 2 | 2 | - | 2 | - | - | - | - |
Firmicutes/Clostridia | 38 | 8 | 20 | 15 | 3 | 2 | - | - | - | - | - | - | - | - | - | - | - |
Chlamydiae | 7 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Bacteroidetes | 30 | - | 1 | - | - | - | - | - | - | - | 1 | - | 1 | - | - | - | 6 |
Chlorobi | 9 | 7 | 2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Actinobacteria | 40 | - | 2 | 13 | - | - | - | 2 | 1 | 11 | - | - | 1 | - | - | - | 17 |
Spirochaetes | 8 | - | - | 1 | - | - | - | - | - | - | - | - | - | - | - | - | 1 |
Planctomycetes | 3 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Cyanobacteria | 16 | 7 | 5 | 5 | - | - | - | - | 1 | - | 1 | - | - | - | 10 | 1 | - |
Chloroflexi | 7 | - | 3 | 3 | - | - | - | - | - | - | - | - | - | - | - | - | - |
Deinococcus-Thermus | 3 | - | - | - | - | - | - | - | 2 | - | - | - | - | 1 | - | - | - |
Thermotogae | 6 | - | 1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Aquificae | 2 | - | - | - | - | - | - | 1 | - | - | - | - | - | 1 | - | - | - |
Fusobacteria | 1 | - | - | - | 1 | - | - | - | - | - | - | - | - | - | - | - | 1 |
Lentisphaerae | 2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1 |
Verrucomicrobia | 1 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Candidate division TM7 | 3 | - | - | 1 | - | - | - | - | - | - | - | - | - | - | - | - | - |
Acidobacteria | 2 | 1 | - | - | - | - | - | - | - | - | - | - | 2 | - | - | - | - |
Deltaproteobacteria | 23 | 12 | 7 | 5 | - | - | - | - | - | - | - | - | 3 | - | - | - | 6 |
Epsilonproteobacteria | 17 | 4 | - | 3 | 3 | - | - | 2 | - | - | 2 | - | - | - | - | - | - |
Alphaproteobacteria/Rickettsiales | 20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Alphaproteobacteria/Others | 63 | 7 | 3 | 5 | 5 | - | - | 3 | 2 | 2 | 1 | - | 1 | 11 | 5 | 11 | 30 |
Alphaproteobacteria/Rhizobiaceae | 5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4 | 4 |
Betaproteobacteria/Bordetella | 3 | - | - | - | - | - | - | - | - | - | - | - | - | 3 | - | - | - |
Betaproteobacteria/Burkholderiaceae | 20 | - | - | - | - | - | - | 3 | 9 | 10 | - | - | - | 5 | - | - | 5 |
Betaproteobacteria/Neisseriaceae | 3 | - | - | - | - | - | - | - | 1 | - | - | - | - | 1 | - | - | - |
Betaproteobacteria/Others | 19 | 1 | 1 | 1 | - | - | - | 1 | - | - | - | - | 1 | 10 | - | - | 6 |
Gammaproteobacteria/Enterobacteriales | 25 | - | 9 | - | 17 | - | - | 16 | - | - | - | - | - | - | - | - | - |
Gammaproteobacteria/Pasteurellaceae | 8 | 3 | - | - | 1 | - | - | - | - | - | - | - | - | - | - | - | - |
Gammaproteobacteria/Vibrionaceae | 12 | - | - | - | 1 | - | - | - | - | - | - | - | - | 5 | - | - | - |
Gammaproteobacteria/Pseudomonadaceae | 8 | - | - | - | 1 | - | - | - | - | - | - | - | - | 8 | - | - | 6 |
Gammaproteobacteria/Xanthomonadaceae | 5 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Gammaproteobacteria/Others | 62 | 1 | 3 | 1 | 4 | - | - | 1 | - | - | 1 | 1 | 1 | 20 | - | 7 | 4 |
Proteobacteria/Others | 2 | - | 1 | - | - | - | - | - | - | - | 1 | - | - | - | - | - | - |
Total | 540 | 52 | 66 | 55 | 44 | 2 | 0 | 30 | 16 | 28 | 9 | 1 | 12 | 65 | 15 | 23 | 87 |