From: Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization
Phylum | Total organisms | Ni-utilizing organisms | Organisms containing different Ni-dependent proteins | ||||
---|---|---|---|---|---|---|---|
 |  |  | Urease | Ni-Fe hydrogenase | Ni-CODH | CODH/ACS | SodN |
Firmicutes/Lactobacillales | 25 | 3 | 1 | - | - | - | - |
Firmicutes/Mollicutes | 17 | 2 | 2 | - | - | - | - |
Firmicutes/Bacillales | 25 | 12 | 9 | - | - | - | - |
Firmicutes/Clostridia | 38 | 28 | 4 | 14 | 21 | 6 | - |
Chlamydiae | 7 | - | - | - | - | - | - |
Bacteroidetes | 30 | 6 | 2 | 3 | - | - | 2 |
Chlorobi | 9 | 8 | - | 8 | 1 | - | - |
Actinobacteria | 40 | 27 | 19 | 12 | - | - | 10 |
Spirochaetes | 8 | - | - | - | - | - | - |
Planctomycetes | 3 | 1 | - | 1 | - | - | - |
Cyanobacteria | 16 | 13 | 11 | 10 | - | - | 4 |
Chloroflexi | 7 | 7 | 1 | 6 | - | 2 | - |
Deinococcus-Thermus | 3 | 1 | 1 | - | - | - | - |
Thermotogae | 6 | - | - | - | - | - | - |
Aquificae | 2 | 2 | - | 2 | - | - | - |
Fusobacteria | 1 | 1 | - | - | - | - | - |
Lentisphaerae | 2 | - | - | - | - | - | - |
Verrucomicrobia | 1 | 1 | 1 | - | - | - | - |
Candidate division TM7 | 3 | - | - | - | - | - | - |
Acidobacteria | 2 | 2 | - | 2 | - | - | - |
Deltaproteobacteria | 23 | 20 | 2 | 17 | 11 | 3 | 1 |
Epsilonproteobacteria | 17 | 17 | 4 | 17 | 2 | - | - |
Alphaproteobacteria/Rickettsiales | 20 | - | - | - | - | - | - |
Alphaproteobacteria/Others | 63 | 41 | 37 | 16 | 2 | - | - |
Alphaproteobacteria/Rhizobiaceae | 5 | 5 | 5 | - | - | - | - |
Betaproteobacteria/Bordetella | 3 | 3 | 3 | - | - | - | - |
Betaproteobacteria/Burkholderiaceae | 20 | 19 | 19 | 4 | - | - | - |
Betaproteobacteria/Neisseriaceae | 3 | 1 | - | - | - | - | - |
Betaproteobacteria/Others | 19 | 14 | 12 | 7 | - | - | - |
Gammaproteobacteria/Enterobacteriales | 25 | 23 | 14 | 18 | - | - | - |
Gammaproteobacteria/Pasteurellaceae | 8 | 4 | 2 | 3 | - | - | - |
Gammaproteobacteria/Vibrionaceae | 12 | 6 | 4 | 3 | - | - | - |
Gammaproteobacteria/Pseudomonadaceae | 8 | 8 | 8 | 1 | 1 | - | - |
Gammaproteobacteria/Xanthomonadaceae | 5 | - | - | - | - | - | - |
Gammaproteobacteria/Others | 62 | 42 | 23 | 22 | - | - | 4 |
Proteobacteria/Others | 2 | 2 | 1 | 2 | - | - | - |
Total | 540 | 319 | 185 | 168 | 38 | 11 | 21 |