Table 3 Single-nucleotide polymorphism (SNP) observed among four mitochondrial genome sequences of Crassostrea hongkongensis.
From: "Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes
Gene | Position | HN | BH45 | HC50 | Yu1 | Type |
|---|---|---|---|---|---|---|
cox1 (1–1617) | 930 | C | C | A | C | Transversion, synonymous |
| Â | 993 | C | C | C | T | Transition, synonymous |
| Â | 1395 | T | T | T | C | Transition, synonymous |
cox3 (2575–3438) | 2805 | G | A | G | G | Transition, synonymous |
| Â | 3282 | G | T | G | G | Transversion, synonymous |
cob (3670–4875) | 4611 | T | C | T | T | Transition, synonymous |
cob-trnD (4876–4983) | 4883 | C | C | C | T | Transition |
cox2 (5054–5755) | 5533 | A | G | G | G | Transition, synonymous |
cox2-trnS 1 (5756–5845) | 5845 | T | G | G | G | Transversion |
rrnS 1 (6452–7525) | 7225 | C | T | C | - | Transition |
| Â | 7325 | C | C | T | - | Transition |
rrnL-trnN (8385–8442) | 8407 | T | C | T | - | Transition |
rrnS 2 (8509–9698) | 8567 | C | T | C | - | Transition |
| Â | 8832 | A | A | A | G | Transition |
| Â | 9036 | G | G | T | G | Transversion |
| Â | 9219 | T | C | T | T | Transition |
| Â | 9372 | C | T | C | C | Transition |
atp6 (9770–10453) | 10025 | T | T | T | C | Transition, nonsynonymous |
atp6-trnG (10454–10965) | 10524 | G | T | G | G | Transversion |
| Â | 10673 | G | A | G | G | Transition |
| Â | 10712 | C | C | T | C | Transition |
| Â | 10778 | A | G | G | G | Transition |
| Â | 10836 | C | T | C | C | Transition |
| Â | 10870 | T | C | T | T | Transition |
trnG-trnV (11036–11643) | 11502 | C | G | G | G | Transversion |
| Â | 11509 | C | T | T | T | Transition |
| Â | 11638 | T | C | T | T | Transition |
trnV (11644–11716) | 11699 | T | C | T | C | Transition |
| Â | 11701 | G | A | A | A | Transition |
nad2 (11759–12757) | 12070 | A | G | A | A | Transition, synonymous |
nad4 (12986–14335) | 13232 | T | C | T | T | Transition, synonymous |
| Â | 13678 | C | A | C | C | Transversion, synonymous |
nad5 (14419–16089) | 15159 | A | G | G | G | Transition, synonymous |
| Â | 15216 | T | C | T | T | Transition, synonymous |
| Â | 15321 | G | G | T | G | Transversion, synonymous |
| Â | 15552 | A | A | A | G | Transition, synonymous |
| Â | 15645 | T | T | C | T | Transition, synonymous |
nad6-trnQ2 (16577–16609) | 16590 | C | C | T | C | Transition |
nad3 (16684–17034) | 16986 | A | G | G | G | Transition, synonymous |
nad1 (17331–18266) | 17876 | T | C | T | T | Transition, synonymous |
| Â | 18134 | A | A | G | A | Transition, synonymous |