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Table 3 Single-nucleotide polymorphism (SNP) observed among four mitochondrial genome sequences of Crassostrea hongkongensis.

From: "Tandem duplication-random loss" is not a real feature of oyster mitochondrial genomes

Gene Position HN BH45 HC50 Yu1 Type
cox1 (1–1617) 930 C C A C Transversion, synonymous
  993 C C C T Transition, synonymous
  1395 T T T C Transition, synonymous
cox3 (2575–3438) 2805 G A G G Transition, synonymous
  3282 G T G G Transversion, synonymous
cob (3670–4875) 4611 T C T T Transition, synonymous
cob-trnD (4876–4983) 4883 C C C T Transition
cox2 (5054–5755) 5533 A G G G Transition, synonymous
cox2-trnS 1 (5756–5845) 5845 T G G G Transversion
rrnS 1 (6452–7525) 7225 C T C - Transition
  7325 C C T - Transition
rrnL-trnN (8385–8442) 8407 T C T - Transition
rrnS 2 (8509–9698) 8567 C T C - Transition
  8832 A A A G Transition
  9036 G G T G Transversion
  9219 T C T T Transition
  9372 C T C C Transition
atp6 (9770–10453) 10025 T T T C Transition, nonsynonymous
atp6-trnG (10454–10965) 10524 G T G G Transversion
  10673 G A G G Transition
  10712 C C T C Transition
  10778 A G G G Transition
  10836 C T C C Transition
  10870 T C T T Transition
trnG-trnV (11036–11643) 11502 C G G G Transversion
  11509 C T T T Transition
  11638 T C T T Transition
trnV (11644–11716) 11699 T C T C Transition
  11701 G A A A Transition
nad2 (11759–12757) 12070 A G A A Transition, synonymous
nad4 (12986–14335) 13232 T C T T Transition, synonymous
  13678 C A C C Transversion, synonymous
nad5 (14419–16089) 15159 A G G G Transition, synonymous
  15216 T C T T Transition, synonymous
  15321 G G T G Transversion, synonymous
  15552 A A A G Transition, synonymous
  15645 T T C T Transition, synonymous
nad6-trnQ2 (16577–16609) 16590 C C T C Transition
nad3 (16684–17034) 16986 A G G G Transition, synonymous
nad1 (17331–18266) 17876 T C T T Transition, synonymous
  18134 A A G A Transition, synonymous
  1. 1Sequence for Yu is from Yu et al., 2008, and the other three sequences are from this study.